4pd0

X-ray diffraction
1.7Å resolution

1.7 A resolution structure of gephyrin's E-domain

Released:
Source organism: Rattus norvegicus
Primary publication:
Modulation of gephyrin-glycine receptor affinity by multivalency.
ACS Chem Biol 9 2554-62 (2014)
PMID: 25137389

Function and Biology Details

Reactions catalysed:
Adenylyl-molybdopterin + molybdate = molybdenum cofactor + AMP
ATP + molybdopterin = diphosphate + adenylyl-molybdopterin
Biochemical function:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-169917 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Gephyrin Chain: A
Molecule details ›
Chain: A
Length: 419 amino acids
Theoretical weight: 45.65 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q03555 (Residues: 350-768; Coverage: 55%)
Gene names: Gph, Gphn
Sequence domains:
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: I222
Unit cell:
a: 87.655Å b: 100.008Å c: 113.695Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.162 0.161 0.184
Expression system: Escherichia coli BL21(DE3)