› 4pd5

X-ray diffraction
2.91Å resolution

Crystal structure of vcCNT-7C8C bound to gemcitabine

Released:
DOI: 10.2210/pdb4pd5/pdb
PDB entry 4pd5 coloured by chain, front view.
PDB entry 4pd5 coloured by chain, side view.
PDB entry 4pd5 coloured by chain, top view.
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Primary publication:
Structural basis of nucleoside and nucleoside drug selectivity by concentrative nucleoside transporters.
Johnson ZL, Lee JH, Lee K, Lee M, Kwon DY, Hong J, Lee SY
OpenAccess logo Elife 3 e03604 (2014)
PMID: 25082345

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-192009 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleoside permease Chain: A
Molecule details ›
Chain: A
Length: 424 amino acids
Theoretical weight: 44.15 KDa
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9KPL5 (Residues: 1-418; Coverage: 100%)
Gene name: VC_2352
Sequence domains:

Ligands and Environments

3 bound ligands:
Ligand GEO 1 x GEO
Ligand NA 1 x NA
Ligand DMU 1 x DMU
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-C
Spacegroup: P63
Unit cell:
a: 119.046Å b: 119.046Å c: 82.285Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.228 0.227 0.258
Expression system: Escherichia coli

Quick links

Citations

7 review citations

SLC transporters as therapeutic targets: emerging opportunities.
Lin et al. (2015)
6 more

4 mentions without citation

Elevator-type mechanisms of membrane transport.
Garaeva et al. (2020)
3 more