› 4q88

X-ray diffraction
1.73Å resolution

Glycosyl hydrolase family 88 from Bacteroides vulgatus

Released:
DOI: 10.2210/pdb4q88/pdb
PDB entry 4q88 coloured by chain, front view.
PDB entry 4q88 coloured by chain, side view.
PDB entry 4q88 coloured by chain, top view.
Source organism: Phocaeicola vulgatus ATCC 8482
Entry authors: Osipiuk J, Li H, Endres M, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107871 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycoside hydrolase family 88 protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 359 amino acids
Theoretical weight: 42.1 KDa
Source organism: Phocaeicola vulgatus ATCC 8482
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A6L195 (Residues: 18-373; Coverage: 100%)
Gene name: BVU_1783
Sequence domains: Glycosyl Hydrolase Family 88
Structure domains: Glycosyltransferase

Ligands and Environments

2 bound ligands:
Ligand EDO 4 x EDO
Ligand SO4 3 x SO4
1 modified residue:
Ligand MSE 20 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P1
Unit cell:
a: 55.415Å b: 73.502Å c: 73.183Å
α: 65.3° β: 83.66° γ: 90.94°
R-values:
R R work R free
0.137 0.135 0.164
Expression system: Escherichia coli BL21(DE3)

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