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PYRIDOXAL-5'-PHOSPHATE

PLP model coordinates provided in the wwPDB chemical component dictionary
PYRIDOXAL-5'-PHOSPHATE in PDB entry 4r2n, assembly 1, side view.
PYRIDOXAL-5'-PHOSPHATE in PDB entry 4r2n, assembly 1, top view.
Formula: C8 H10 N O6 P
Molecular weight: 247 Da
Putative function: Cofactor
Cofactor class: Pyridoxal 5'-phosphate
Similarity to cofactor representative (PLP): 1.0

Environment details NEW

PLP 401 bound to chain A
Ligands and residuesInteractions
 hydrophobic
negatively charged
aromatic
polar
cystein
water
positively charged
other
glycine
bound molecule
glycans (SNFG)
aromatic
clashes
covalent
electrostatic
metal hydrophobic
vdw
TYR54GLY84SER85VAL86PHE110CYS153ASN157ASP184ALA186TYR187THR214SER216LYS217ARG225PHE402

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The above 2D and 3D (Mol*) views of ligand interactions use quaternary structure derived from the PDB entry.
Please note:
  • Some chain IDs in the tooltip are followed by a number in square brackets. This number corresponds to the operation ID (mmCIF ‘oper_expression’) used to transform the chain.
  • The structure seen in Mol* (3D view) was protonated using ChimeraX.
  • Interactions were calculated using Arpeggio (see details for interaction types).
  • The colour scheme used is consistent with Clustal X.

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