Structure analysis

HLA class I micropolymorphisms determine peptide-HLA landscape and dictate differential HIV-1 escape through identical epitopes

X-ray diffraction
1.38Å resolution
Assembly composition:
hetero trimer (preferred)
Entry contents: 3 distinct polypeptide molecules

Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero trimer
Accessible surface area: 18972.43 Å2
Buried surface area: 5832.1 Å2
Dissociation area: 911.46 Å2
Dissociation energy (ΔGdiss): 2.14 kcal/mol
Dissociation entropy (TΔSdiss): 7.47 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-135143

Macromolecules

PDBe-KB: UniProt Coverage View: P01889  
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Chain: B
Length: 100 amino acids
Theoretical weight: 11.88 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P61769 (Residues: 21-119; Coverage: 100%)
Gene names: B2M, CDABP0092, HDCMA22P
Pfam: Immunoglobulin C1-set domain
InterPro:
CATH: Immunoglobulins
PDBe-KB: UniProt Coverage View: P61769  
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Chain: C
Length: 9 amino acids
Theoretical weight: 1.03 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Not provided
UniProt:
  • Canonical: P04585 (Residues: 180-188; Coverage: 1%)
Gene name: gag-pol
PDBe-KB: UniProt Coverage View: P04585  
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