4v8t Citations

Cryo-EM structures of Arx1 and maturation factors Rei1 and Jjj1 bound to the 60S ribosomal subunit.

Nat Struct Mol Biol 19 1228-33 (2012)
Cited: 73 times
EuropePMC logo PMID: 23142985

Abstract

Eukaryotic ribosome biogenesis requires many protein factors that facilitate the assembly, nuclear export and final maturation of 40S and 60S particles. We have biochemically characterized ribosomal complexes of the yeast 60S-biogenesis factor Arx1 and late-maturation factors Rei1 and Jjj1 and determined their cryo-EM structures. Arx1 was visualized bound to the 60S subunit together with Rei1, at 8.1-Å resolution, to reveal the molecular details of Arx1 binding whereby Arx1 arrests the eukaryotic-specific rRNA expansion segment 27 near the polypeptide tunnel exit. Rei1 and Jjj1, which have been implicated in Arx1 recycling, bind in the vicinity of Arx1 and form a network of interactions. We suggest that, in addition to the role of Arx1 during pre-60S nuclear export, the binding of Arx1 conformationally locks the pre-60S subunit and inhibits the premature association of nascent chain-processing factors to the polypeptide tunnel exit.

Articles - 4v8t mentioned but not cited (2)

  1. Structure and function of the yeast listerin (Ltn1) conserved N-terminal domain in binding to stalled 60S ribosomal subunits. Doamekpor SK, Lee JW, Hepowit NL, Wu C, Charenton C, Leonard M, Bengtson MH, Rajashankar KR, Sachs MS, Lima CD, Joazeiro CA. Proc Natl Acad Sci U S A 113 E4151-60 (2016)
  2. Wide mutational analysis to ascertain the functional roles of eL33 in ribosome biogenesis and translation initiation. Martín-Marcos P, Gil-Hernández Á, Tamame M. Curr Genet 68 619-644 (2022)


Reviews citing this publication (24)

  1. Ribosome biogenesis in the yeast Saccharomyces cerevisiae. Woolford JL, Baserga SJ. Genetics 195 643-681 (2013)
  2. An overview of pre-ribosomal RNA processing in eukaryotes. Henras AK, Plisson-Chastang C, O'Donohue MF, Chakraborty A, Gleizes PE. Wiley Interdiscip Rev RNA 6 225-242 (2015)
  3. Ribosome assembly coming into focus. Klinge S, Woolford JL. Nat Rev Mol Cell Biol 20 116-131 (2019)
  4. Eukaryotic Ribosome Assembly. Baßler J, Hurt E. Annu Rev Biochem 88 281-306 (2019)
  5. Eukaryotic ribosome assembly, transport and quality control. Peña C, Hurt E, Panse VG. Nat Struct Mol Biol 24 689-699 (2017)
  6. How Do J-Proteins Get Hsp70 to Do So Many Different Things? Craig EA, Marszalek J. Trends Biochem Sci 42 355-368 (2017)
  7. Quality control mechanisms during ribosome maturation. Karbstein K. Trends Cell Biol 23 242-250 (2013)
  8. N-terminal protein modifications: Bringing back into play the ribosome. Giglione C, Fieulaine S, Meinnel T. Biochimie 114 134-146 (2015)
  9. Molecular basis of the human ribosomopathy Shwachman-Diamond syndrome. Warren AJ. Adv Biol Regul 67 109-127 (2018)
  10. Pre-Ribosomal RNA Processing in Human Cells: From Mechanisms to Congenital Diseases. Aubert M, O'Donohue MF, Lebaron S, Gleizes PE. Biomolecules 8 E123 (2018)
  11. Principles of 60S ribosomal subunit assembly emerging from recent studies in yeast. Konikkat S, Woolford JL. Biochem J 474 195-214 (2017)
  12. The Nucleolus: A Multiphase Condensate Balancing Ribosome Synthesis and Translational Capacity in Health, Aging and Ribosomopathies. Correll CC, Bartek J, Dundr M. Cells 8 E869 (2019)
  13. Mechanistic insight into eukaryotic 60S ribosomal subunit biogenesis by cryo-electron microscopy. Greber BJ. RNA 22 1643-1662 (2016)
  14. Assembly and nuclear export of pre-ribosomal particles in budding yeast. Gerhardy S, Menet AM, Peña C, Petkowski JJ, Panse VG. Chromosoma 123 327-344 (2014)
  15. Two chaperones locked in an embrace: structure and function of the ribosome-associated complex RAC. Zhang Y, Sinning I, Rospert S. Nat Struct Mol Biol 24 611-619 (2017)
  16. Placeholder factors in ribosome biogenesis: please, pave my way. Espinar-Marchena FJ, Babiano R, Cruz J. Microb Cell 4 144-168 (2017)
  17. Shaping the Nascent Ribosome: AAA-ATPases in Eukaryotic Ribosome Biogenesis. Prattes M, Lo YH, Bergler H, Stanley RE. Biomolecules 9 E715 (2019)
  18. Ribosome biogenesis factors-from names to functions. Dörner K, Ruggeri C, Zemp I, Kutay U. EMBO J 42 e112699 (2023)
  19. Extensions, Extra Factors, and Extreme Complexity: Ribosomal Structures Provide Insights into Eukaryotic Translation. Weisser M, Ban N. Cold Spring Harb Perspect Biol 11 a032367 (2019)
  20. Insights into remodeling events during eukaryotic large ribosomal subunit assembly provided by high resolution cryo-EM structures. Biedka S, Wu S, LaPeruta AJ, Gao N, Woolford JL. RNA Biol 14 1306-1313 (2017)
  21. Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins. Gamalinda M, Woolford JL. Translation (Austin) 3 e975018 (2015)
  22. ABCE Proteins: From Molecules to Development. Navarro-Quiles C, Mateo-Bonmatí E, Micol JL. Front Plant Sci 9 1125 (2018)
  23. Quality control ensures fidelity in ribosome assembly and cellular health. Parker MD, Karbstein K. J Cell Biol 222 e202209115 (2023)
  24. The roles of multifunctional protein ErbB3 binding protein 1 (EBP1) isoforms from development to disease. Hwang I, Ko HR, Ahn JY. Exp Mol Med 52 1039-1047 (2020)

Articles citing this publication (47)