PDB 4wfa structure summary ‹ Protein Data Bank in Europe (PDBe)

Function and Biology Details

Biochemical function:

structural constituent of ribosome

Biological process:

translation

Cellular component:

ribonucleoprotein complex

Sequence domains:

92 more domains

Structure analysis Details

Assembly composition:

hetero 28-mer (preferred)

Assembly name:

Large ribosomal protein and RNA (preferred)

PDBe Complex ID:

PDB-CPX-140910 (preferred)

Entry contents:

26 distinct polypeptide molecules
2 distinct RNA molecules

Macromolecules (28 distinct):

Large ribosomal subunit protein uL2 Chain: A

Molecule details ›

Chain: A
Length: 277 amino acids
Theoretical weight: 30.22 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: P60430 (Residues: 1-277; Coverage: 100%)

Gene names: SAOUHSC_02509, rplB
Sequence domains:

Structure domains:

Large ribosomal subunit protein uL3 Chain: B

Molecule details ›

Chain: B
Length: 220 amino acids
Theoretical weight: 23.76 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW06 (Residues: 1-220; Coverage: 100%)

Gene names: SAOUHSC_02512, rplC
Sequence domains: Ribosomal protein L3

Large ribosomal subunit protein uL4 Chain: C

Molecule details ›

Chain: C
Length: 207 amino acids
Theoretical weight: 22.5 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW07 (Residues: 1-207; Coverage: 100%)

Gene names: SAOUHSC_02511, rplD
Sequence domains: Ribosomal protein L4/L1 family

Large ribosomal subunit protein uL5 Chain: D

Molecule details ›

Chain: D
Length: 179 amino acids
Theoretical weight: 20.3 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW18 (Residues: 1-179; Coverage: 100%)

Gene names: SAOUHSC_02500, rplE
Sequence domains:

Structure domains: 50s Ribosomal Protein L5; Chain: A,

Large ribosomal subunit protein uL6 Chain: E

Molecule details ›

Chain: E
Length: 178 amino acids
Theoretical weight: 19.82 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW21 (Residues: 1-178; Coverage: 100%)

Gene names: SAOUHSC_02496, rplF
Sequence domains: Ribosomal protein L6
Structure domains: Ribosomal protein L6, alpha-beta domain

Large ribosomal subunit protein uL13 Chain: G

Molecule details ›

Chain: G
Length: 145 amino acids
Theoretical weight: 16.36 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW38 (Residues: 1-145; Coverage: 100%)

Gene names: SAOUHSC_02478, rplM
Sequence domains: Ribosomal protein L13

Large ribosomal subunit protein uL14 Chain: H

Molecule details ›

Chain: H
Length: 122 amino acids
Theoretical weight: 13.16 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW16 (Residues: 1-122; Coverage: 100%)

Gene names: SAOUHSC_02502, rplN
Sequence domains: Ribosomal protein L14p/L23e
Structure domains: Ribosomal protein L14

Large ribosomal subunit protein uL15 Chain: I

Molecule details ›

Chain: I
Length: 146 amino acids
Theoretical weight: 15.63 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: P0A0F8 (Residues: 1-146; Coverage: 100%)

Gene names: SAOUHSC_02492, rplO
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Large ribosomal subunit protein uL16 Chain: J

Molecule details ›

Chain: J
Length: 144 amino acids
Theoretical weight: 16.27 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW13 (Residues: 1-144; Coverage: 100%)

Gene names: SAOUHSC_02505, rplP
Sequence domains: Ribosomal protein L16p/L10e
Structure domains: Ribosomal protein L10e/L16

Large ribosomal subunit protein bL17 Chain: K

Molecule details ›

Chain: K
Length: 122 amino acids
Theoretical weight: 13.77 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW33 (Residues: 1-122; Coverage: 100%)

Gene names: SAOUHSC_02484, rplQ
Sequence domains: Ribosomal protein L17
Structure domains: Ribosomal protein L17

Large ribosomal subunit protein uL18 Chain: L

Molecule details ›

Chain: L
Length: 119 amino acids
Theoretical weight: 13.12 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW22 (Residues: 1-119; Coverage: 100%)

Gene names: SAOUHSC_02495, rplR
Sequence domains: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Structure domains: Nucleotidyltransferase; domain 5

Large ribosomal subunit protein bL19 Chain: M

Molecule details ›

Chain: M
Length: 116 amino acids
Theoretical weight: 13.39 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FZ42 (Residues: 1-116; Coverage: 100%)

Gene names: SAOUHSC_01211, rplS
Sequence domains: Ribosomal protein L19

Large ribosomal subunit protein bL20 Chain: N

Molecule details ›

Chain: N
Length: 118 amino acids
Theoretical weight: 13.72 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FXQ1 (Residues: 1-118; Coverage: 100%)

Gene names: SAOUHSC_01784, rplT
Sequence domains: Ribosomal protein L20

Large ribosomal subunit protein bL21 Chain: O

Molecule details ›

Chain: O
Length: 102 amino acids
Theoretical weight: 11.35 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FXS8 (Residues: 1-102; Coverage: 100%)

Gene names: SAOUHSC_01757, rplU
Sequence domains: Ribosomal prokaryotic L21 protein

Large ribosomal subunit protein uL22 Chain: P

Molecule details ›

Chain: P
Length: 117 amino acids
Theoretical weight: 12.86 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW11 (Residues: 1-117; Coverage: 100%)

Gene names: SAOUHSC_02507, rplV
Sequence domains: Ribosomal protein L22p/L17e
Structure domains: Ribosomal protein L22/L17

Large ribosomal subunit protein uL23 Chain: Q

Molecule details ›

Chain: Q
Length: 91 amino acids
Theoretical weight: 10.63 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW08 (Residues: 1-91; Coverage: 100%)

Gene names: SAOUHSC_02510, rplW
Sequence domains: Ribosomal protein L23
Structure domains: Alpha-Beta Plaits

Large ribosomal subunit protein uL24 Chain: R

Molecule details ›

Chain: R
Length: 105 amino acids
Theoretical weight: 11.56 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW17 (Residues: 1-105; Coverage: 100%)

Gene names: SAOUHSC_02501, rplX
Sequence domains:

Large ribosomal subunit protein bL25 Chain: S

Molecule details ›

Chain: S
Length: 217 amino acids
Theoretical weight: 23.81 KDa
Source organism: Staphylococcus aureus subsp. aureus USA300
UniProt:

Canonical: Q2FJE0 (Residues: 1-217; Coverage: 100%)

Gene names: SAUSA300_0479, ctc, rplY
Sequence domains:

Structure domains:

Large ribosomal subunit protein bL27 Chain: T

Molecule details ›

Chain: T
Length: 94 amino acids
Theoretical weight: 10.33 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FXT0 (Residues: 1-94; Coverage: 100%)

Gene names: SAOUHSC_01755, rpmA
Sequence domains: Ribosomal L27 protein

Large ribosomal subunit protein bL28 Chain: U

Molecule details ›

Chain: U
Length: 62 amino acids
Theoretical weight: 7 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FZ60 (Residues: 1-62; Coverage: 100%)

Gene names: SAOUHSC_01191, rpmB
Sequence domains: Ribosomal L28 family

Large ribosomal subunit protein uL29 Chain: V

Molecule details ›

Chain: V
Length: 69 amino acids
Theoretical weight: 8.11 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FW14 (Residues: 1-69; Coverage: 100%)

Gene names: SAOUHSC_02504, rpmC
Sequence domains: Ribosomal L29 protein
Structure domains: Helix Hairpins

Large ribosomal subunit protein uL30 Chain: W

Molecule details ›

Chain: W
Length: 59 amino acids
Theoretical weight: 6.57 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: P0A0G2 (Residues: 1-59; Coverage: 100%)

Gene names: SAOUHSC_02493, rpmD
Sequence domains: Ribosomal protein L30p/L7e
Structure domains: Ribosomal protein L30, ferredoxin-like fold domain

Large ribosomal subunit protein bL32 Chain: Z

Molecule details ›

Chain: Z
Length: 58 amino acids
Theoretical weight: 6.66 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FZF1 (Residues: 1-58; Coverage: 100%)

Gene names: SAOUHSC_01078, rpmF
Sequence domains: Ribosomal L32p protein family

Large ribosomal subunit protein bL34 Chain: 2

Molecule details ›

Chain: 2
Length: 45 amino acids
Theoretical weight: 5.45 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FUQ0 (Residues: 1-45; Coverage: 100%)

Gene names: SAOUHSC_03055, rpmH
Sequence domains: Ribosomal protein L34
Structure domains: Helix Hairpins

Large ribosomal subunit protein bL35 Chain: 3

Molecule details ›

Chain: 3
Length: 66 amino acids
Theoretical weight: 7.72 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:

Canonical: Q2FXQ0 (Residues: 1-66; Coverage: 100%)

Gene names: SAOUHSC_01785, rpmI
Sequence domains: Ribosomal protein L35

Large ribosomal subunit protein bL36 Chain: 4

Molecule details ›

Chain: 4
Length: 37 amino acids
Theoretical weight: 4.32 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt: