› 4wm1

X-ray diffraction
1.6Å resolution

High pressure protein crystallography of hen egg white lysozyme at 500 MPa

Released:
DOI: 10.2210/pdb4wm1/pdb
PDB entry 4wm1 coloured by chain, front view.
PDB entry 4wm1 coloured by chain, side view.
PDB entry 4wm1 coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
High-pressure protein crystallography of hen egg-white lysozyme.
Yamada H, Nagae T, Watanabe N
OpenAccess logo Acta Crystallogr D Biol Crystallogr 71 742-53 (2015)
PMID: 25849385

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chain: A
Molecule details ›
Chain: A
Length: 129 amino acids
Theoretical weight: 14.33 KDa
Source organism: Gallus gallus
UniProt:
  • Canonical: P00698 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family
Structure domains: Lysozyme

Ligands and Environments

2 bound ligands:
Ligand NA 1 x NA
Ligand CL 6 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NW12A
Spacegroup: P43212
Unit cell:
a: 77.287Å b: 77.287Å c: 37.938Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.162 0.16 0.208

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Citations

11 citation in other articles

Effect of X-ray free-electron laser-induced shockwaves on haemoglobin microcrystals delivered in a liquid jet.
Grünbein et al. (2021)
10 more

1 mention without citation

High-pressure protein crystallography of hen egg-white lysozyme.
Yamada et al. (2015)