› 4zjp

X-ray diffraction
1.63Å resolution

Structure of an ABC-Transporter Solute Binding Protein (SBP_IPR025997) from Actinobacillus Succinogenes (Asuc_0197, TARGET EFI-511067) with bound beta-D-ribopyranose

Released:
DOI: 10.2210/pdb4zjp/pdb
PDB entry 4zjp coloured by chain, front view.
PDB entry 4zjp coloured by chain, side view.
PDB entry 4zjp coloured by chain, top view.
Source organism: Actinobacillus succinogenes 130Z
Entry authors: Yadava U, Vetting MW, Al Obaidi NF, Toro R, Morisco LL, Benach J, Wasserman SR, Attonito JD, Glenn AS, Chamala S, Chowdhury S, Lafleur J, Love J, Seidel RD, Whalen KL, Gerlt JA, Almo SC, Enzyme Function Initiative (EFI)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108134 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Periplasmic binding protein domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 292 amino acids
Theoretical weight: 30.82 KDa
Source organism: Actinobacillus succinogenes 130Z
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A6VKT0 (Residues: 1-1, 24-292; Coverage: 92%)
Gene name: Asuc_0197
Sequence domains: Periplasmic binding protein domain
Structure domains: Rossmann fold

Ligands and Environments

2 bound ligands:
Ligand RIP 1 x RIP
Ligand EDO 1 x EDO
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU300
Spacegroup: P1
Unit cell:
a: 36.261Å b: 37.416Å c: 48.165Å
α: 95.2° β: 101.03° γ: 97.09°
R-values:
R R work R free
0.144 0.142 0.185
Expression system: Escherichia coli BL21(DE3)

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