5dbu

X-ray diffraction
2.8Å resolution

Crystal structure of 2-deoxyribose-5-phosphate aldolase (1-220) from Streptococcus suis

Released:

Function and Biology Details

Reaction catalysed:
2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde
Biochemical function:
Cellular component:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-112659 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Deoxyribose-phosphate aldolase Chains: A, B, C, D, E, F, G, H, I, J, K, L, M
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M
Length: 223 amino acids
Theoretical weight: 23.28 KDa
Source organism: Streptococcus suis GZ1
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: D5AHU8 (Residues: 1-220; Coverage: 100%)
Gene names: SSGZ1_0956, deoC
Sequence domains: DeoC/LacD family aldolase
Structure domains: Aldolase class I

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 7A (6B, 6C1)
Spacegroup: C2
Unit cell:
a: 192.816Å b: 107.134Å c: 180.966Å
α: 90° β: 110.5° γ: 90°
R-values:
R R work R free
0.225 0.222 0.278
Expression system: Escherichia coli BL21(DE3)

PDB-REDO