5uk4

X-ray diffraction
3.2Å resolution

VESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 22-mer (preferred)
PDBe Complex ID:
PDB-CPX-103191 (preferred)
Entry contents:
2 distinct polypeptide molecules
1 distinct RNA molecule
Macromolecules (3 distinct):
Nucleoprotein Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
Length: 422 amino acids
Theoretical weight: 47.46 KDa
Source organism: Vesicular stomatitis Indiana virus strain San Juan
Expression system: Escherichia coli
UniProt:
  • Canonical: P03521 (Residues: 1-422; Coverage: 100%)
Gene name: N
Sequence domains: Rhabdovirus nucleocapsid protein
Structure domains:
Ig-like domain-containing protein Chains: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t
Molecule details ›
Chains: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t
Length: 139 amino acids
Theoretical weight: 15.28 KDa
Source organism: Vicugna pacos
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A192B6J6 (Residues: 1-125; Coverage: 100%)
Sequence domains: Immunoglobulin V-set domain
Structure domains: Immunoglobulins
RNA (45-MER) Chains: u, v, w, x
Molecule details ›
Chains: u, v, w, x
Length: 45 nucleotides
Theoretical weight: 13.73 KDa

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-C
Spacegroup: P1
Unit cell:
a: 147.555Å b: 156.008Å c: 217.45Å
α: 79.24° β: 75.66° γ: 62.27°
R-values:
R R work R free
0.237 0.236 0.288
Expression system: Escherichia coli