PDB 5y5s structure summary ‹ Protein Data Bank in Europe (PDBe)

Function and Biology Details

Biochemical function:

electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Biological process:

photosynthesis, light reaction

Cellular component:

plasma membrane light-harvesting complex

Sequence domains:

11 more domains

Structure analysis Details

Assembly composition:

hetero 36-mer (preferred)

PDBe Complex ID:

PDB-CPX-108558 (preferred)

Entry contents:

6 distinct polypeptide molecules

Macromolecules (6 distinct):

Photosynthetic reaction center cytochrome c subunit Chain: C

Molecule details ›

Chain: C
Length: 404 amino acids
Theoretical weight: 43.18 KDa
Source organism: Thermochromatium tepidum
UniProt:

Canonical: D2Z0P5 (Residues: 1-404; Coverage: 100%)

Gene name: pufC
Sequence domains: Photosynthetic reaction centre cytochrome C subunit
Structure domains: Photosynthetic Reaction Center, subunit C, domain 2

Reaction center protein L chain Chain: L

Molecule details ›

Chain: L
Length: 281 amino acids
Theoretical weight: 31.52 KDa
Source organism: Thermochromatium tepidum
UniProt:

Canonical: D2Z0P3 (Residues: 1-281; Coverage: 100%)

Gene name: pufL
Sequence domains: Photosynthetic reaction centre protein
Structure domains: Photosystem II protein D1-like

Reaction center protein M chain Chain: M

Molecule details ›

Chain: M
Length: 325 amino acids
Theoretical weight: 36.61 KDa
Source organism: Thermochromatium tepidum
UniProt:

Canonical: A8ASG6 (Residues: 1-325; Coverage: 100%)

Gene name: pufM
Sequence domains: Photosynthetic reaction centre protein
Structure domains: Photosystem II protein D1-like

Photosynthetic reaction center H subunit Chain: H

Molecule details ›

Chain: H
Length: 259 amino acids
Theoretical weight: 28.21 KDa
Source organism: Thermochromatium tepidum
UniProt:

Canonical: D2Z0P9 (Residues: 1-259; Coverage: 100%)

Gene name: puhA
Sequence domains:

Structure domains:

Antenna complex alpha/beta subunit domain-containing protein Chains: 1, 3, 5, 7, 9, A, D, F, I, K, O, Q, S, U, W, Y

Molecule details ›

Chains: 1, 3, 5, 7, 9, A, D, F, I, K, O, Q, S, U, W, Y
Length: 61 amino acids
Theoretical weight: 7.03 KDa
Source organism: Thermochromatium tepidum
UniProt:

Canonical: D2Z0P2 (Residues: 1-61; Coverage: 100%)

Gene name: pufA
Sequence domains: Antenna complex alpha/beta subunit
Structure domains: Light-harvesting complex

Antenna complex alpha/beta subunit domain-containing protein Chains: 0, 2, 4, 6, 8, B, E, G, J, N, P, R, T, V, X, Z

Molecule details ›

Chains: 0, 2, 4, 6, 8, B, E, G, J, N, P, R, T, V, X, Z
Length: 47 amino acids
Theoretical weight: 5.53 KDa
Source organism: Thermochromatium tepidum
UniProt:

Canonical: D2Z0P1 (Residues: 1-47; Coverage: 100%)

Gene name: pufB
Sequence domains: Antenna complex alpha/beta subunit
Structure domains: Single alpha-helices involved in coiled-coils or other helix-helix interfaces