5amz Citations

Automated harvesting and processing of protein crystals through laser photoablation.

Abstract

Currently, macromolecular crystallography projects often require the use of highly automated facilities for crystallization and X-ray data collection. However, crystal harvesting and processing largely depend on manual operations. Here, a series of new methods are presented based on the use of a low X-ray-background film as a crystallization support and a photoablation laser that enable the automation of major operations required for the preparation of crystals for X-ray diffraction experiments. In this approach, the controlled removal of the mother liquor before crystal mounting simplifies the cryocooling process, in many cases eliminating the use of cryoprotectant agents, while crystal-soaking experiments are performed through diffusion, precluding the need for repeated sample-recovery and transfer operations. Moreover, the high-precision laser enables new mounting strategies that are not accessible through other methods. This approach bridges an important gap in automation and can contribute to expanding the capabilities of modern macromolecular crystallography facilities.

Articles - 5amz mentioned but not cited (1)

  1. Automated harvesting and processing of protein crystals through laser photoablation. Zander U, Hoffmann G, Cornaciu I, Marquette JP, Papp G, Landret C, Seroul G, Sinoir J, Röwer M, Felisaz F, Rodriguez-Puente S, Mariaule V, Murphy P, Mathieu M, Cipriani F, Márquez JA. Acta Crystallogr D Struct Biol 72 454-466 (2016)


Reviews citing this publication (2)

  1. Protein X-ray Crystallography and Drug Discovery. Maveyraud L, Mourey L. Molecules 25 (2020)
  2. Assessment of Occupational Health Hazards Due to Particulate Matter Originated from Spices. Upadhyay E, Mohammad AlMass AA, Dasgupta N, Rahman S, Kim J, Datta M. Int J Environ Res Public Health 16 (2019)

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  2. Three-Dimensional Structure of Full-Length NtrX, an Unusual Member of the NtrC Family of Response Regulators. Fernández I, Cornaciu I, Carrica MD, Uchikawa E, Hoffmann G, Sieira R, Márquez JA, Goldbaum FA. J. Mol. Biol. 429 1192-1212 (2017)
  3. Multi-position data collection and dynamic beam sizing: recent improvements to the automatic data-collection algorithms on MASSIF-1. Svensson O, Gilski M, Nurizzo D, Bowler MW. Acta Crystallogr D Struct Biol 74 433-440 (2018)
  4. A plant-like mechanism coupling m6A reading to polyadenylation safeguards transcriptome integrity and developmental gene partitioning in Toxoplasma. Farhat DC, Bowler MW, Communie G, Pontier D, Belmudes L, Mas C, Corrao C, Couté Y, Bougdour A, Lagrange T, Hakimi MA, Swale C. Elife 10 e68312 (2021)
  5. Structural basis for genome wide recognition of 5-bp GC motifs by SMAD transcription factors. Martin-Malpartida P, Batet M, Kaczmarska Z, Freier R, Gomes T, Aragón E, Zou Y, Wang Q, Xi Q, Ruiz L, Vea A, Márquez JA, Massagué J, Macias MJ. Nat Commun 8 2070 (2017)
  6. In situ serial crystallography for rapid de novo membrane protein structure determination. Huang CY, Olieric V, Howe N, Warshamanage R, Weinert T, Panepucci E, Vogeley L, Basu S, Diederichs K, Caffrey M, Wang M. Commun Biol 1 124 (2018)
  7. Structural Bases for the Allergenicity of Fra a 1.02 in Strawberry Fruits. Orozco-Navarrete B, Kaczmarska Z, Dupeux F, Garrido-Arandia M, Pott D, Perales AD, Casañal A, Márquez JA, Valpuesta V, Merchante C. J Agric Food Chem 68 10951-10961 (2020)
  8. Structural and functional comparison of fumarylacetoacetate domain containing protein 1 in human and mouse. Weiss AKH, Naschberger A, Cappuccio E, Metzger C, Mottes L, Holzknecht M, von Velsen J, Bowler MW, Rupp B, Jansen-Dürr P. Biosci Rep 40 (2020)
  9. Research Support, Non-U.S. Gov't iNEXT: a European facility network to stimulate translational structural biology. iNEXT Consortium. FEBS Lett. 592 1909-1917 (2018)
  10. An automated platform for structural analysis of membrane proteins through serial crystallography. Healey RD, Basu S, Humm AS, Leyrat C, Cong X, Golebiowski J, Dupeux F, Pica A, Granier S, Márquez JA. Cell Rep Methods 1 None (2021)
  11. BRCA2 binding through a cryptic repeated motif to HSF2BP oligomers does not impact meiotic recombination. Ghouil R, Miron S, Koornneef L, Veerman J, Paul MW, Le Du MH, Sleddens-Linkels E, van Rossum-Fikkert SE, van Loon Y, Felipe-Medina N, Pendas AM, Maas A, Essers J, Legrand P, Baarends WM, Kanaar R, Zinn-Justin S, Zelensky AN. Nat Commun 12 4605 (2021)
  12. BRCA2-HSF2BP oligomeric ring disassembly by BRME1 promotes homologous recombination. Ghouil R, Miron S, Sato K, Ristic D, van Rossum-Fikkert SE, Legrand P, Ouldali M, Winter JM, Ropars V, David G, Arteni AA, Wyman C, Knipscheer P, Kanaar R, Zelensky AN, Zinn-Justin S. Sci Adv 9 eadi7352 (2023)
  13. Bacterial protease uses distinct thermodynamic signatures for substrate recognition. Bezerra GA, Ohara-Nemoto Y, Cornaciu I, Fedosyuk S, Hoffmann G, Round A, Márquez JA, Nemoto TK, Djinović-Carugo K. Sci Rep 7 2848 (2017)
  14. Computational and Experimental Druggability Assessment of Human DNA Glycosylases. Michel M, Visnes T, Homan EJ, Seashore-Ludlow B, Hedenström M, Wiita E, Vallin K, Paulin CBJ, Zhang J, Wallner O, Scobie M, Schmidt A, Jenmalm-Jensen A, Warpman Berglund U, Helleday T. ACS Omega 4 11642-11656 (2019)
  15. Considerations Regarding Activity Determinants of Fungal Polyphenol Oxidases Based on Mutational and Structural Studies. Nikolaivits E, Valmas A, Dedes G, Topakas E, Dimarogona M. Appl Environ Microbiol 87 e00396-21 (2021)
  16. Di-phosphorylated BAF shows altered structural dynamics and binding to DNA, but interacts with its nuclear envelope partners. Marcelot A, Petitalot A, Ropars V, Le Du MH, Samson C, Dubois S, Hoffmann G, Miron S, Cuniasse P, Marquez JA, Thai R, Theillet FX, Zinn-Justin S. Nucleic Acids Res 49 3841-3855 (2021)
  17. Novel pyrrolopyrimidine derivatives: design, synthesis, molecular docking, molecular simulations and biological evaluations as antioxidant and anti-inflammatory agents. Sayed AI, Mansour YE, Ali MA, Aly O, Khoder ZM, Said AM, Fatahala SS, Abd El-Hameed RH. J Enzyme Inhib Med Chem 37 1821-1837 (2022)
  18. Rational design of the zonulin inhibitor AT1001 derivatives as potential anti SARS-CoV-2. Di Micco S, Rahimova R, Sala M, Scala MC, Vivenzio G, Musella S, Andrei G, Remans K, Mammri L, Snoeck R, Bifulco G, Di Matteo F, Vestuto V, Campiglia P, Márquez JA, Fasano A. Eur J Med Chem 244 114857 (2022)
  19. Specific radiation damage is a lesser concern at room temperature. Gotthard G, Aumonier S, De Sanctis D, Leonard G, von Stetten D, Royant A. IUCrJ 6 665-680 (2019)
  20. Structural basis for distinct roles of SMAD2 and SMAD3 in FOXH1 pioneer-directed TGF-β signaling. Aragón E, Wang Q, Zou Y, Morgani SM, Ruiz L, Kaczmarska Z, Su J, Torner C, Tian L, Hu J, Shu W, Agrawal S, Gomes T, Márquez JA, Hadjantonakis AK, Macias MJ, Massagué J. Genes Dev. 33 1506-1524 (2019)
  21. Structural features of chloroplast trigger factor determined at 2.6 Å resolution. Carius Y, Ries F, Gries K, Trentmann O, Lancaster CRD, Willmund F. Acta Crystallogr D Struct Biol 78 1259-1272 (2022)
  22. Synthesis of Novel 2-Thiouracil-5-Sulfonamide Derivatives as Potent Inducers of Cell Cycle Arrest and CDK2A Inhibition Supported by Molecular Docking. Fatahala SS, Sayed AI, Mahgoub S, Taha H, El-Sayed MK, El-Shehry MF, Awad SM, Abd El-Hameed RH. Int J Mol Sci 22 11957 (2021)
  23. The BAF A12T mutation disrupts lamin A/C interaction, impairing robust repair of nuclear envelope ruptures in Nestor-Guillermo progeria syndrome cells. Janssen A, Marcelot A, Breusegem S, Legrand P, Zinn-Justin S, Larrieu D. Nucleic Acids Res 50 9260-9278 (2022)
  24. Unraveling the structural and chemical features of biological short hydrogen bonds. Zhou S, Wang L. Chem Sci 10 7734-7745 (2019)
  25. Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes. Ruiz L, Kaczmarska Z, Gomes T, Aragon E, Torner C, Freier R, Baginski B, Martin-Malpartida P, de Martin Garrido N, Marquez JA, Cordeiro TN, Pluta R, Macias MJ. Comput Struct Biotechnol J 19 632-646 (2021)
  26. Versatile microporous polymer-based supports for serial macromolecular crystallography. Martiel I, Beale JH, Karpik A, Huang CY, Vera L, Olieric N, Wranik M, Tsai CJ, Mühle J, Aurelius O, John J, Högbom M, Wang M, Marsh M, Padeste C. Acta Crystallogr D Struct Biol 77 1153-1167 (2021)