Skip to main content
Skip to local navigation
Skip to EBI global navigation menu
Skip to expanded EBI global navigation menu (includes all sub-sections)

The latest features of this page are not supported in older IE browsers. Please update to IE11 or view this page in another browser (eg Chrome or Firefox) to access updated PDBe pages! x

Services
Research
Training
Industry
About us

Protein Data Bank in Europe

Bringing Structure to Biology

Examples: hemoglobin, BRCA1_HUMAN

Advanced search

Feedback

5br8 › 5MC

5-METHYLCYTIDINE-5'-MONOPHOSPHATE

Modified residue 5MC in PDB entry 5br8, assembly 1, front view.

Modified residue 5MC in PDB entry 5br8, assembly 1, side view.

Modified residue 5MC in PDB entry 5br8, assembly 1, top view.

Formula: C₁₀ H₁₆ N₃ O₈ P

Molecular weight: 337 Da

One-letter code: C

Charge: 0

IUPAC InChI: InChI=1S/C10H16N3O8P/c1-4-2-13(10(16)12-8(4)11)9-7(15)6(14)5(21-9)3-20-22(17,18)19/h2,5-7,9,14-15H,3H2,1H3,(H2,11,12,16)(H2,17,18,19)/t5-,6-,7-,9-/m1/s1

IUPAC InChI key: NJQONZSFUKNYOY-JXOAFFINSA-N

Molecule 1

Hightlight 5MC residues in viewer :

View region

From

highlight-only

Hide sections

	Chains
	Rfam
	Ligand binding sites
	Interaction interfaces

Chains

Chain A (auth A)

Chain A

Rfam

Residues mapped to Rfam domains

Ligand binding sites

Residues binding MAGNESIUM ION <img src="https://www.ebi.ac.uk/pdbe/static/files/pdbechem_v2/MG_200.svg" />

Residues binding PAROMOMYCIN <img src="https://www.ebi.ac.uk/pdbe/static/files/pdbechem_v2/PAR_200.svg" />

Interaction interfaces

Residues interacting with Small ribosomal subunit protein uS5 (Q5SHQ5)

Residues interacting with Small ribosomal subunit protein uS4 (P80373)

Residues interacting with Small ribosomal subunit protein uS12 (Q5SHN3)

Residues interacting with Small ribosomal subunit protein bS16 (Q5SJH3)

Residues interacting with Small ribosomal subunit protein bS20 (P80380)

Residues interacting with Small ribosomal subunit protein uS17 (P0DOY7)

Residues interacting with Small ribosomal subunit protein uS3 (P80372)

Residues interacting with Small ribosomal subunit protein uS8 (P0DOY9)

Residues interacting with Small ribosomal subunit protein uS15 (Q5SJ76)

Residues interacting with Small ribosomal subunit protein bS18 (Q5SLQ0)

Residues interacting with Small ribosomal subunit protein bS6 (Q5SLP8)

Residues interacting with Small ribosomal subunit protein uS11 (P80376)

Residues interacting with Small ribosomal subunit protein uS7 (P17291)

Residues interacting with Small ribosomal subunit protein uS2 (P80371)

Residues interacting with Small ribosomal subunit protein uS9 (P80374)

Residues interacting with Small ribosomal subunit protein uS13 (P80377)

Residues interacting with Small ribosomal subunit protein uS19 (Q5SHP2)

Residues interacting with Small ribosomal subunit protein uS10 (Q5SHN7)

Residues interacting with Small ribosomal subunit protein uS14 (P0DOY6)

Residues interacting with Small ribosomal subunit protein bTHX (Q5SIH3)

Sequence conservation

Amino acid probabilities The amino acid probabilities are calculated using HMM profiles based on multiple sequence alignments. Click to see more details...

Data displayed by

Property

Probability

Download MSA Click to download the multiple sequence alignment (MSA) file

Amino acid properties

Aromatic

Polar

Hydrophobic

Negative charge

Proline

Positive charge

Cysteine

Glycine

Variants

Filter Consequence

Likely disease

Predicted deleteriousPredicted benign

Likely benign

Uncertain

Filter Provenance

UniProt reviewed

ClinVar reviewed

Large scale studies

FoldX analysis

Missense3D

Observed in PDB

SKEMPI

FireProtDB

Frustratometer

neXtProt

5br8:

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Load File(s)

Quick links

5br8 overview
- Citations
Structure analysis
Function and Biology
Ligands and Environments
Experiments and Validation

is a member of

PDB › 5br8 › 5MC

5-METHYLCYTIDINE-5'-MONOPHOSPHATE

Filter Consequence

Filter Provenance

Quick links

5br8 › 5MC