› 5c39

X-ray diffraction
1.75Å resolution

Crystal structure of a designed Mn binding peptide

Released:
DOI: 10.2210/pdb5c39/pdb
PDB entry 5c39 coloured by chain, front view.
PDB entry 5c39 coloured by chain, side view.
PDB entry 5c39 coloured by chain, top view.
Source organism: synthetic construct
Primary publication:
Design of dinuclear manganese cofactors for bacterial reaction centers.
Olson TL, Espiritu E, Edwardraja S, Simmons CR, Williams JC, Ghirlanda G, Allen JP
Biochim Biophys Acta 1857 539-547 (2016)
PMID: 26392146

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-165484 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
P0 Manganese cluster peptide Chains: A, B
Molecule details ›
Chains: A, B
Length: 51 amino acids
Theoretical weight: 6.29 KDa
Source organism: synthetic construct
Expression system: Escherichia coli BL21(DE3)
Structure domains: Immunoglobulin FC, subunit C

Ligands and Environments

1 bound ligand:
Ligand MN 2 x MN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: P212121
Unit cell:
a: 41.162Å b: 52.465Å c: 52.547Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.201 0.2 0.236
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

1 review citation

Artificial Small Molecules as Cofactors and Biomacromolecular Building Blocks in Synthetic Biology: Design, Synthesis, Applications, and Challenges.
Liu et al. (2023)
4 other articles

2 mentions without citation

Designed for life: biocompatible de novo designed proteins and components.
Grayson et al. (2018)
1 more