› 5cde

X-ray diffraction
1.85Å resolution

R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris

Released:
DOI: 10.2210/pdb5cde/pdb
PDB entry 5cde coloured by chain, front view.
PDB entry 5cde coloured by chain, side view.
PDB entry 5cde coloured by chain, top view.
Source organism: Xanthomonas campestris pv. campestris str. ATCC 33913
Entry authors: Kumar A, Are V, Ghosh B, Jamdar S, Makde R

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-569738 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Proline dipeptidase Chains: A, B
Molecule details ›
Chains: A, B
Length: 398 amino acids
Theoretical weight: 42.63 KDa
Source organism: Xanthomonas campestris pv. campestris str. ATCC 33913
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8P839 (Residues: 2-399; Coverage: 100%)
Gene names: XCC2409, pepQ
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand SO4 3 x SO4
Ligand ZN 7 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RRCAT INDUS-2 BEAMLINE PX-BL21
Spacegroup: P212121
Unit cell:
a: 81.088Å b: 101.947Å c: 111.509Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.187 0.185 0.224
Expression system: Escherichia coli

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