› 5df5

X-ray diffraction
1.3Å resolution

The structure of oxidized rat cytochrome c (T28E) at 1.30 angstroms resolution.

Released:
DOI: 10.2210/pdb5df5/pdb
PDB entry 5df5 coloured by chain, front view.
PDB entry 5df5 coloured by chain, side view.
PDB entry 5df5 coloured by chain, top view.
Source organism: Rattus norvegicus
Entry authors: Edwards BFP, Mahapatra G, Vaishnav AA, Brunzelle JS, Huttemann M

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-549116 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c, somatic Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 104 amino acids
Theoretical weight: 11.53 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P62898 (Residues: 2-105; Coverage: 99%)
Gene name: Cycs
Sequence domains: Cytochrome c
Structure domains: Cytochrome c-like domain

Ligands and Environments

2 bound ligands:
Ligand HEC 4 x HEC
Ligand FC6 3 x FC6
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-D
Spacegroup: P1
Unit cell:
a: 34.609Å b: 51.739Å c: 61.748Å
α: 110.01° β: 93.09° γ: 91.88°
R-values:
R R work R free
0.149 0.148 0.178
Expression system: Escherichia coli BL21(DE3)

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