› 5dla

X-ray diffraction
1.22Å resolution

Structure of Tetragonal Lysozyme solved by UWO Students

Released:
DOI: 10.2210/pdb5dla/pdb
Model geometry
Fit model/data
PDB entry 5dla coloured by chain, front view.
PDB entry 5dla coloured by chain, side view.
PDB entry 5dla coloured by chain, top view.
Source organism: Gallus gallus
Entry authors: Bednarski R, Cirricione N, Greco A, Hodgson R, Kent S, McGowan J, Notherm B, Patt M, Vue L, Bianchetti CM

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chain: A
Molecule details ›
Chain: A
Length: 129 amino acids
Theoretical weight: 14.33 KDa
Source organism: Gallus gallus
Expression system: Escherichia coli
UniProt:
  • Canonical: P00698 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family
Structure domains: Lysozyme

Ligands and Environments

2 bound ligands:
Ligand EDO 3 x EDO
Ligand CL 7 x CL
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: APS BEAMLINE 21-ID-F
Spacegroup: P43212
Unit cell:
a: 78.938Å b: 78.938Å c: 36.882Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.138 0.137 0.164
Expression system: Escherichia coli

Quick links

PDB-REDO

The sliders below show the change in model quality between original PDB entry and the PDB-REDO entry

Model Geometry
 
 
Data not available
DNA/RNA Geometry
 
 
Data not available
Fit model/data
 
 
Data not available
PDB-REDO