Show captions
5do4 Overview
![<div class='caption-body'>The deposited structure of PDB entry <span class='highlight'>5do4</span> coloured by chain, front view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin light chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin heavy chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>RNA (25-MER)</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>2-acetamido-2-deoxy-beta-D-glucopyranose</span>;</li> <li class='image_legend_li'>4 copies of <span class='highlight'>1,2-ETHANEDIOL</span>;</li> <li class='image_legend_li'>2 copies of <span class='highlight'>GLYCEROL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>CALCIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>(4R)-2-METHYLPENTANE-2,4-DIOL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>MAGNESIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>water</span>.</li></ul></div>](https://www.ebi.ac.uk/pdbe/static/entry/5do4_deposited_chain_front_image-800x800.png "PDB entry 5do4 coloured by chain, front view.")
![<div class='caption-body'>The deposited structure of PDB entry <span class='highlight'>5do4</span> coloured by chain, side view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin light chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin heavy chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>RNA (25-MER)</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>2-acetamido-2-deoxy-beta-D-glucopyranose</span>;</li> <li class='image_legend_li'>4 copies of <span class='highlight'>1,2-ETHANEDIOL</span>;</li> <li class='image_legend_li'>2 copies of <span class='highlight'>GLYCEROL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>CALCIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>(4R)-2-METHYLPENTANE-2,4-DIOL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>MAGNESIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>water</span>.</li></ul></div>](https://www.ebi.ac.uk/pdbe/static/entry/5do4_deposited_chain_side_image-800x800.png "PDB entry 5do4 coloured by chain, side view.")
![<div class='caption-body'>The deposited structure of PDB entry <span class='highlight'>5do4</span> coloured by chain, top view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin light chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin heavy chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>RNA (25-MER)</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>2-acetamido-2-deoxy-beta-D-glucopyranose</span>;</li> <li class='image_legend_li'>4 copies of <span class='highlight'>1,2-ETHANEDIOL</span>;</li> <li class='image_legend_li'>2 copies of <span class='highlight'>GLYCEROL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>CALCIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>(4R)-2-METHYLPENTANE-2,4-DIOL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>MAGNESIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>water</span>.</li></ul></div>](https://www.ebi.ac.uk/pdbe/static/entry/5do4_deposited_chain_top_image-800x800.png "PDB entry 5do4 coloured by chain, top view.")
![<div class='caption-body'>The deposited structure of PDB entry <span class='highlight'>5do4</span> coloured by chemically distinct molecules, front view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin light chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin heavy chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>RNA (25-MER)</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>2-acetamido-2-deoxy-beta-D-glucopyranose</span>;</li> <li class='image_legend_li'>4 copies of <span class='highlight'>1,2-ETHANEDIOL</span>;</li> <li class='image_legend_li'>2 copies of <span class='highlight'>GLYCEROL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>CALCIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>(4R)-2-METHYLPENTANE-2,4-DIOL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>MAGNESIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>water</span>.</li></ul></div>](https://www.ebi.ac.uk/pdbe/static/entry/5do4_deposited_chemically_distinct_molecules_front_image-800x800.png "PDB entry 5do4 coloured by chemically distinct molecules, front view.")
![<div class='caption-body'>The deposited structure of PDB entry <span class='highlight'>5do4</span> coloured by chemically distinct molecules, side view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin light chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin heavy chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>RNA (25-MER)</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>2-acetamido-2-deoxy-beta-D-glucopyranose</span>;</li> <li class='image_legend_li'>4 copies of <span class='highlight'>1,2-ETHANEDIOL</span>;</li> <li class='image_legend_li'>2 copies of <span class='highlight'>GLYCEROL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>CALCIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>(4R)-2-METHYLPENTANE-2,4-DIOL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>MAGNESIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>water</span>.</li></ul></div>](https://www.ebi.ac.uk/pdbe/static/entry/5do4_deposited_chemically_distinct_molecules_side_image-800x800.png "PDB entry 5do4 coloured by chemically distinct molecules, side view.")
![<div class='caption-body'>The deposited structure of PDB entry <span class='highlight'>5do4</span> coloured by chemically distinct molecules, top view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin light chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin heavy chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>RNA (25-MER)</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>2-acetamido-2-deoxy-beta-D-glucopyranose</span>;</li> <li class='image_legend_li'>4 copies of <span class='highlight'>1,2-ETHANEDIOL</span>;</li> <li class='image_legend_li'>2 copies of <span class='highlight'>GLYCEROL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>CALCIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>(4R)-2-METHYLPENTANE-2,4-DIOL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>MAGNESIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>water</span>.</li></ul></div>](https://www.ebi.ac.uk/pdbe/static/entry/5do4_deposited_chemically_distinct_molecules_top_image-800x800.png "PDB entry 5do4 coloured by chemically distinct molecules, top view.")
![<div class='caption-body'>Hetero trimeric assembly 1 of PDB entry <span class='highlight'>5do4</span> contains 1 copy of <span class='highlight'>D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide</span>. Front view.</div>](https://www.ebi.ac.uk/pdbe/static/entry/5do4_entity_4_front_image-800x800.png "D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide in PDB entry 5do4, assembly 1, front view.")
![<div class='caption-body'>Hetero trimeric assembly 1 of PDB entry <span class='highlight'>5do4</span> coloured by chemically distinct molecules, front view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin light chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin heavy chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>RNA (25-MER)</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>2-acetamido-2-deoxy-beta-D-glucopyranose</span>;</li> <li class='image_legend_li'>4 copies of <span class='highlight'>1,2-ETHANEDIOL</span>;</li> <li class='image_legend_li'>2 copies of <span class='highlight'>GLYCEROL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>CALCIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>(4R)-2-METHYLPENTANE-2,4-DIOL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>MAGNESIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>water</span>.</li></ul></div>](https://www.ebi.ac.uk/pdbe/static/entry/5do4_assembly_1_chemically_distinct_molecules_front_image-800x800.png "Hetero trimeric assembly 1 of PDB entry 5do4 coloured by chemically distinct molecules, front view.")
![<div class='caption-body'>Hetero trimeric assembly 1 of PDB entry <span class='highlight'>5do4</span> coloured by chemically distinct molecules, side view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin light chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin heavy chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>RNA (25-MER)</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>2-acetamido-2-deoxy-beta-D-glucopyranose</span>;</li> <li class='image_legend_li'>4 copies of <span class='highlight'>1,2-ETHANEDIOL</span>;</li> <li class='image_legend_li'>2 copies of <span class='highlight'>GLYCEROL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>CALCIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>(4R)-2-METHYLPENTANE-2,4-DIOL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>MAGNESIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>water</span>.</li></ul></div>](https://www.ebi.ac.uk/pdbe/static/entry/5do4_assembly_1_chemically_distinct_molecules_side_image-800x800.png "Hetero trimeric assembly 1 of PDB entry 5do4 coloured by chemically distinct molecules, side view.")
![<div class='caption-body'>Hetero trimeric assembly 1 of PDB entry <span class='highlight'>5do4</span> coloured by chemically distinct molecules, top view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin light chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>Thrombin heavy chain</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>RNA (25-MER)</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>2-acetamido-2-deoxy-beta-D-glucopyranose</span>;</li> <li class='image_legend_li'>4 copies of <span class='highlight'>1,2-ETHANEDIOL</span>;</li> <li class='image_legend_li'>2 copies of <span class='highlight'>GLYCEROL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>CALCIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>(4R)-2-METHYLPENTANE-2,4-DIOL</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>MAGNESIUM ION</span>;</li> <li class='image_legend_li'>1 copy of <span class='highlight'>water</span>.</li></ul></div>](https://www.ebi.ac.uk/pdbe/static/entry/5do4_assembly_1_chemically_distinct_molecules_top_image-800x800.png "Hetero trimeric assembly 1 of PDB entry 5do4 coloured by chemically distinct molecules, top view.")