5eju Citations

Evolution and characterization of a new reversibly photoswitching chromogenic protein, Dathail.

J Mol Biol 428 1776-89 (2016)
Related entries: 5eb6, 5eb7, 5ebj, 5exu

Cited: 9 times
EuropePMC logo PMID: 27000644

Abstract

We report the engineering of a new reversibly switching chromogenic protein, Dathail. Dathail was evolved from the extremely thermostable fluorescent proteins thermal green protein (TGP) and eCGP123 using directed evolution and ratiometric sorting. Dathail has two spectrally distinct chromogenic states with low quantum yields, corresponding to absorbance in a ground state with a maximum at 389nm, and a photo-induced metastable state with a maximum at 497nm. In contrast to all previously described photoswitchable proteins, both spectral states of Dathail are non-fluorescent. The photo-induced chromogenic state of Dathail has a lifetime of ~50min at 293K and pH7.5 as measured by UV-Vis spectrophotometry, returning to the ground state through thermal relaxation. X-ray crystallography provided structural insights supporting a change in conformation and coordination in the chromophore pocket as being responsible for Dathail's photoswitching. Neutron crystallography, carried out for the first time on a protein from the green fluorescent protein family, showed a distribution of hydrogen atoms revealing protonation of the chromophore 4-hydroxybenzyl group in the ground state. The neutron structure also supports the hypothesis that the photo-induced proton transfer from the chromophore occurs through water-mediated proton relay into the bulk solvent. Beyond its spectroscopic curiosity, Dathail has several characteristics that are improvements for applications, including low background fluorescence, large spectral separation, rapid switching time, and the ability to switch many times. Therefore, Dathail is likely to be extremely useful in the quickly developing fields of imaging and biosensors, including photochromic Förster resonance energy transfer, high-resolution microscopy, and live tracking within the cell.

Reviews citing this publication (2)

  1. Identifying and Visualizing Macromolecular Flexibility in Structural Biology. Palamini M, Canciani A, Forneris F. Front Mol Biosci 3 47 (2016)
  2. Neutron Crystallography for the Study of Hydrogen Bonds in Macromolecules. Oksanen E, Chen JC, Fisher SZ. Molecules 22 E596 (2017)

Articles citing this publication (7)

  1. Direct Observation of Protonation State Modulation in SARS-CoV-2 Main Protease upon Inhibitor Binding with Neutron Crystallography. Kneller DW, Phillips G, Weiss KL, Zhang Q, Coates L, Kovalevsky A. J Med Chem 64 4991-5000 (2021)
  2. Mannobiose Binding Induces Changes in Hydrogen Bonding and Protonation States of Acidic Residues in Concanavalin A As Revealed by Neutron Crystallography. Gerlits OO, Coates L, Woods RJ, Kovalevsky A. Biochemistry 56 4747-4750 (2017)
  3. The maximum penalty criterion for ridge regression: application to the calibration of the force constant in elastic network models. Dehouck Y, Bastolla U. Integr Biol (Camb) 9 627-641 (2017)
  4. Application of profile fitting method to neutron time-of-flight protein single crystal diffraction data collected at the iBIX. Yano N, Yamada T, Hosoya T, Ohhara T, Tanaka I, Kusaka K. Sci Rep 6 36628 (2016)
  5. Fusion proteins with chromogenic and keratin binding modules. Tinoco A, Antunes E, Martins M, Gonçalves F, Gomes AC, Silva C, Cavaco-Paulo A, Ribeiro A, Ribeiro A. Sci Rep 9 14044 (2019)
  6. Room-temperature photo-induced martensitic transformation in a protein crystal. Dajnowicz S, Langan PS, Weiss KL, Ivanov IN, Kovalevsky A. IUCrJ 6 619-629 (2019)
  7. What are the current limits on determination of protonation state using neutron macromolecular crystallography? Liebschner D, Afonine PV, Moriarty NW, Adams PD. Methods Enzymol 634 225-255 (2020)