› 5ffd

X-ray diffraction
1.45Å resolution

CopM in the Ag-bound form (by co-crystallization)

Released:
DOI: 10.2210/pdb5ffd/pdb
PDB entry 5ffd coloured by chain, front view.
PDB entry 5ffd coloured by chain, side view.
PDB entry 5ffd coloured by chain, top view.
Source organism: Synechocystis sp. PCC 6803
Primary publication:
Structural basis for copper/silver binding by the Synechocystis metallochaperone CopM.
Zhao S, Wang X, Niu G, Dong W, Wang J, Fang Y, Lin Y, Liu L
Acta Crystallogr D Struct Biol 72 997-1005 (2016)
PMID: 27599732

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180563 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF305 domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 172 amino acids
Theoretical weight: 20.38 KDa
Source organism: Synechocystis sp. PCC 6803
Expression system: Escherichia coli
UniProt:
  • Canonical: Q6YRW5 (Residues: 27-196; Coverage: 87%)
Gene name: slr6039
Sequence domains: Domain of unknown function (DUF305)
Structure domains: Ferritin

Ligands and Environments

1 bound ligand:
Ligand AG 3 x AG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P21212
Unit cell:
a: 53.872Å b: 85.959Å c: 31.729Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.158 0.156 0.193
Expression system: Escherichia coli

Quick links

Citations

1 citations in other articles

Structural and Biochemical Characterization of Silver/Copper Binding by Dendrorhynchus zhejiangensis Ferritin.
Huo et al. (2023)