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Cryo electron microscopy structure of Grapevine Fanleaf Virus complex with Nanobody

Source organisms:
Biochemical function: structural molecule activity
Biological process: not assigned
Cellular component: viral capsid

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GO terms

Biochemical function:
Biological process:
  • not assigned
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF03688
Domain description: Nepovirus coat protein, C-terminal domain
Occurring in:
  1. Coat protein
The deposited structure of PDB entry 5foj contains 1 copy of Pfam domain PF03688 (Nepovirus coat protein, C-terminal domain) in Coat protein. Showing 1 copy in chain B.

PF03391
Domain description: Nepovirus coat protein, central domain
Occurring in:
  1. Coat protein
The deposited structure of PDB entry 5foj contains 1 copy of Pfam domain PF03391 (Nepovirus coat protein, central domain) in Coat protein. Showing 1 copy in chain B.

PF03689
Domain description: Nepovirus coat protein, N-terminal domain
Occurring in:
  1. Coat protein
The deposited structure of PDB entry 5foj contains 1 copy of Pfam domain PF03689 (Nepovirus coat protein, N-terminal domain) in Coat protein. Showing 1 copy in chain B.

InterPro InterPro annotations
IPR029053
Domain description: Viral coat protein subunit
Occurring in:
  1. Coat protein
IPR013106
Domain description: Immunoglobulin V-set domain
Occurring in:
  1. Nanobody
IPR005305
Domain description: Nepovirus coat protein, C-terminal
Occurring in:
  1. Coat protein
IPR005054
Domain description: Nepovirus coat protein
Occurring in:
  1. Coat protein
IPR005306
Domain description: Nepovirus coat protein, N-terminal
Occurring in:
  1. Coat protein
IPR003599
Domain description: Immunoglobulin domain subtype
Occurring in:
  1. Nanobody
IPR036179
Domain description: Immunoglobulin-like domain superfamily
Occurring in:
  1. Nanobody
IPR013783
Domain description: Immunoglobulin-like fold
Occurring in:
  1. Nanobody
IPR007110
Domain description: Immunoglobulin-like domain
Occurring in:
  1. Nanobody

Structure domain

CATH CATH domain
2.60.120.20
Class: Mainly Beta
Architecture: Sandwich
Topology: Jelly Rolls
Homology: Jelly Rolls
Occurring in:
  1. Coat protein
The deposited structure of PDB entry 5foj contains 2 copies of CATH domain 2.60.120.20 (Jelly Rolls) in Coat protein. Showing 2 copies in chain B.

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