5gmq

X-ray diffraction
2.7Å resolution

Structure of MERS-CoV RBD in complex with a fully human antibody MCA1

Released:
Model geometry
Fit model/data

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-234973 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (4 distinct):
Spike protein S1 Chain: A
Molecule details ›
Chain: A
Length: 229 amino acids
Theoretical weight: 25.26 KDa
Source organism: Middle East respiratory syndrome-related coronavirus
Expression system: Insect cell expression vector pTIE1
UniProt:
  • Canonical: K9N5Q8 (Residues: 366-588; Coverage: 17%)
Gene names: 3, S
Sequence domains: Betacoronavirus spike glycoprotein S1, receptor binding
Structure domains:
MCA1 heavy chain Chain: B
Molecule details ›
Chain: B
Length: 231 amino acids
Theoretical weight: 24.48 KDa
Source organism: Homo sapiens
Expression system: Mammalian expression vector pCBio
Structure domains: Immunoglobulins
MCA1 light chain Chain: C

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, MAN
1 bound ligand:
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P3121
Unit cell:
a: 153.46Å b: 153.46Å c: 97.494Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.241 0.239 0.285
Expression systems:
  • Insect cell expression vector pTIE1
  • Mammalian expression vector pCBio