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Crystal structure of a bacterial fucosidase with iminocyclitol (2S,3S,4R,5S)-3,4-dihydroxy-2-ethynyl-5-methylpyrrolidine

Source organism: Bacteroides thetaiotaomicron VPI-5482
Biochemical function: hydrolase activity
Biological process: glycoside catabolic process
Cellular component: lysosome

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GO terms

Sequence family

Pfam Protein family (Pfam)
PF01120
Domain description: Alpha-L-fucosidase
Occurring in:
  1. Alpha-L-fucosidase
The deposited structure of PDB entry 5i5r contains 4 copies of Pfam domain PF01120 (Alpha-L-fucosidase) in Alpha-L-fucosidase. Showing 1 copy in chain C.

InterPro InterPro annotations
IPR016286
Domain description: Alpha-L-fucosidase, metazoa-type
Occurring in:
  1. Alpha-L-fucosidase
IPR000933
Domain description: Glycoside hydrolase, family 29
Occurring in:
  1. Alpha-L-fucosidase
IPR013780
Domain description: Glycosyl hydrolase, all-beta
Occurring in:
  1. Alpha-L-fucosidase
IPR017853
Domain description: Glycoside hydrolase superfamily
Occurring in:
  1. Alpha-L-fucosidase

Structure domains

CATH CATH domains
3.20.20.80
Class: Alpha Beta
Architecture: Alpha-Beta Barrel
Topology: TIM Barrel
Homology: Glycosidases
Occurring in:
  1. Alpha-L-fucosidase
The deposited structure of PDB entry 5i5r contains 4 copies of CATH domain 3.20.20.80 (TIM Barrel) in Alpha-L-fucosidase. Showing 1 copy in chain C.
2.60.40.1180
Class: Mainly Beta
Architecture: Sandwich
Topology: Immunoglobulin-like
Homology: Golgi alpha-mannosidase II
Occurring in:
  1. Alpha-L-fucosidase
The deposited structure of PDB entry 5i5r contains 4 copies of CATH domain 2.60.40.1180 (Immunoglobulin-like) in Alpha-L-fucosidase. Showing 1 copy in chain C.

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