› 5j4p

Solution NMR

DIY G-Quadruplexes: Solution structure of d(GGTTTGGTTTTGGTTTGG) in sodium

Released:
DOI: 10.2210/pdb5j4p/pdb
PDB entry 5j4p coloured by chain, ensemble of 10 models, front view.
PDB entry 5j4p coloured by chain, ensemble of 10 models, side view.
PDB entry 5j4p coloured by chain, ensemble of 10 models, top view.
Source organism: synthetic construct
Primary publication:
Encoding canonical DNA quadruplex structure.
Dvorkin SA, Karsisiotis AI, Webba da Silva M
Sci Adv 4 eaat3007 (2018)
PMID: 30182059

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-118861 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*GP*GP*TP*TP*TP*GP*GP*TP*TP*TP*TP*GP*GP*TP*TP*TP*GP*G)-3') Chain: A
Molecule details ›
Chain: A
Length: 18 nucleotides
Theoretical weight: 5.63 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 47%
Refinement method: molecular dynamics
Expression system: Not provided

Quick links

Citations

6 review citations

Oxidative Stress: Role and Response of Short Guanine Tracts at Genomic Locations.
Singh et al. (2019)
5 more

2 mentions without citation

Encoding canonical DNA quadruplex structure.
Dvorkin et al. (2018)
1 more