› 5jfi

X-ray diffraction
2.75Å resolution

Crystal structure of a TDIF-TDR complex

Released:
DOI: 10.2210/pdb5jfi/pdb
PDB entry 5jfi coloured by chain, front view.
PDB entry 5jfi coloured by chain, side view.
PDB entry 5jfi coloured by chain, top view.
Source organism: Arabidopsis thaliana
Entry authors: Xu G, Li Z

Function and Biology Details

Reaction catalysed: 
ATP + a protein = ADP + a phosphoprotein
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183070 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Leucine-rich repeat receptor-like protein kinase TDR Chains: A, B
Molecule details ›
Chains: A, B
Length: 613 amino acids
Theoretical weight: 67.43 KDa
Source organism: Arabidopsis thaliana
Expression system: Insect cell expression vector pTIE1
UniProt:
  • Canonical: Q9FII5 (Residues: 30-642; Coverage: 61%)
Gene names: At5g61480, MCI2.4, PXY, TDR
Sequence domains:
CLE41p Chains: C, D
Molecule details ›
Chains: C, D
Length: 12 amino acids
Theoretical weight: 1.28 KDa
Source organism: Arabidopsis thaliana
Expression system: Not provided
UniProt:
  • Canonical: Q84W98 (Residues: 88-99; Coverage: 19%)
Gene names: At3g24770, CLE41, K7P8.35

Ligands and Environments

1 bound ligand:
Ligand NAG 10 x NAG
1 modified residue:
Ligand HYP 4 x HYP

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Spacegroup: P41
Unit cell:
a: 92.445Å b: 92.445Å c: 252.615Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.216 0.214 0.266
Expression systems:
  • Insect cell expression vector pTIE1
  • Not provided

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