GDP

GUANOSINE-5'-DIPHOSPHATE

Formula: C10 H15 N5 O11 P2
Molecular weight: 443 Da
One-letter code: G

Environment details NEW

GDP 901 bound to chain DC
hydrophobic
negatively charged
aromatic
polar
cystein
water
positively charged
other
glycine
bound molecule
glycans (SNFG)

aromatic
clashes

covalent
electrostatic

metal hydrophobic

vdw
HIS27VAL28ASP29HIS30GLY31LYS32SER33THR34GLY67ASN158LYS159ASP161ARG162SER213LEU215MG902
The above 2D and 3D (Mol*) views of ligand interactions use quaternary structure derived from the PDB entry.
Please note:
  • Some chain IDs in the tooltip are followed by a number in square brackets. This number corresponds to the operation ID (mmCIF ‘oper_expression’) used to transform the chain.
  • The structure seen in Mol* (3D view) was protonated using ChimeraX.
  • Interactions were calculated using Arpeggio (see details for interaction types).
  • The colour scheme used is consistent with Clustal X.