› 5kxm

X-ray diffraction
1.2Å resolution

Hen Egg White Lysozyme at 100K, Data set 3

Released:
DOI: 10.2210/pdb5kxm/pdb
PDB entry 5kxm coloured by chain, front view.
PDB entry 5kxm coloured by chain, side view.
PDB entry 5kxm coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
Conformational variation of proteins at room temperature is not dominated by radiation damage.
Russi S, González A, Kenner LR, Keedy DA, Fraser JS, van den Bedem H
OpenAccess logo J Synchrotron Radiat 24 73-82 (2017)
PMID: 28009548

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chain: A
Molecule details ›
Chain: A
Length: 129 amino acids
Theoretical weight: 14.33 KDa
Source organism: Gallus gallus
Expression system: Gallus gallus
UniProt:
  • Canonical: P00698 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family
Structure domains: Lysozyme

Ligands and Environments

3 bound ligands:
Ligand NA 2 x NA
Ligand CL 3 x CL
Ligand ACT 1 x ACT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL14-1
Spacegroup: P43212
Unit cell:
a: 77.289Å b: 77.289Å c: 37.205Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.153 0.152 0.18
Expression system: Gallus gallus

Quick links

Citations

2 review citations

Atomic displacement parameters in structural biology.
Carugo O. (2018)
1 more