PDB 5lmv structure summary ‹ Protein Data Bank in Europe (PDBe)

Function and Biology Details

Biochemical function:

rRNA binding

Biological process:

translation

Cellular component:

ribonucleoprotein complex

Sequence domains:

91 more domains

Structure analysis Details

Assembly composition:

hetero 26-mer (preferred)

PDBe Complex ID:

PDB-CPX-250073 (preferred)

Entry contents:

23 distinct polypeptide molecules
3 distinct RNA molecules

Macromolecules (26 distinct):

Small ribosomal subunit protein uS2 Chain: B

Molecule details ›

Chain: B
Length: 256 amino acids
Theoretical weight: 29.32 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: P80371 (Residues: 1-256; Coverage: 100%)

Gene names: TTHA0861, rps2, rpsB
Sequence domains: Ribosomal protein S2

Small ribosomal subunit protein uS3 Chain: C

Molecule details ›

Chain: C
Length: 239 amino acids
Theoretical weight: 26.75 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: P80372 (Residues: 1-239; Coverage: 100%)

Gene names: TTHA1686, rps3, rpsC
Sequence domains:

Small ribosomal subunit protein uS4 Chain: D

Molecule details ›

Chain: D
Length: 209 amino acids
Theoretical weight: 24.37 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: P80373 (Residues: 1-209; Coverage: 100%)

Gene names: TTHA1665, rps4, rpsD
Sequence domains:

Small ribosomal subunit protein uS5 Chain: E

Molecule details ›

Chain: E
Length: 162 amino acids
Theoretical weight: 17.58 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: Q5SHQ5 (Residues: 1-162; Coverage: 100%)

Gene names: TTHA1675, rpsE
Sequence domains:

Small ribosomal subunit protein bS6 Chain: F

Molecule details ›

Chain: F
Length: 101 amino acids
Theoretical weight: 11.99 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: Q5SLP8 (Residues: 1-101; Coverage: 100%)

Gene names: TTHA0245, rpsF
Sequence domains: Ribosomal protein S6

Small ribosomal subunit protein uS7 Chain: G

Molecule details ›

Chain: G
Length: 156 amino acids
Theoretical weight: 18.05 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: P17291 (Residues: 1-156; Coverage: 100%)

Gene names: TTHA1696, rps7, rpsG
Sequence domains: Ribosomal protein S7p/S5e

Small ribosomal subunit protein uS8 Chain: H

Molecule details ›

Chain: H
Length: 138 amino acids
Theoretical weight: 15.87 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: P0DOY9 (Residues: 1-138; Coverage: 100%)

Gene names: TTHA1678, rpsH
Sequence domains: Ribosomal protein S8

Small ribosomal subunit protein uS9 Chain: I

Molecule details ›

Chain: I
Length: 128 amino acids
Theoretical weight: 14.41 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: P80374 (Residues: 1-128; Coverage: 100%)

Gene names: TTHA1464, rps9, rpsI
Sequence domains: Ribosomal protein S9/S16

Small ribosomal subunit protein uS10 Chain: J

Molecule details ›

Chain: J
Length: 105 amino acids
Theoretical weight: 11.95 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: Q5SHN7 (Residues: 1-105; Coverage: 100%)

Gene names: TTHA1693, rpsJ
Sequence domains: Ribosomal protein S10p/S20e

Small ribosomal subunit protein uS11 Chain: K

Molecule details ›

Chain: K
Length: 129 amino acids
Theoretical weight: 13.74 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: P80376 (Residues: 1-129; Coverage: 100%)

Gene names: TTHA1666, rps11, rpsK
Sequence domains: Ribosomal protein S11

Small ribosomal subunit protein uS12 Chain: L

Molecule details ›

Chain: L
Length: 132 amino acids
Theoretical weight: 14.64 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: Q5SHN3 (Residues: 1-132; Coverage: 100%)

Gene names: TTHA1697, rpsL
Sequence domains: Ribosomal protein S12/S23

Small ribosomal subunit protein uS13 Chain: M

Molecule details ›

Chain: M
Length: 126 amino acids
Theoretical weight: 14.34 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: P80377 (Residues: 1-126; Coverage: 100%)

Gene names: TTHA1667, rps13, rpsM
Sequence domains: Ribosomal protein S13/S18

Small ribosomal subunit protein uS14 Chain: N

Molecule details ›

Chain: N
Length: 61 amino acids
Theoretical weight: 7.16 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: P0DOY6 (Residues: 1-61; Coverage: 100%)

Gene names: TTHA1679, rpsN, rpsZ
Sequence domains: Ribosomal protein S14p/S29e

Small ribosomal subunit protein uS15 Chain: O

Molecule details ›

Chain: O
Length: 89 amino acids
Theoretical weight: 10.58 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: Q5SJ76 (Residues: 1-89; Coverage: 100%)

Gene names: TTHA1138, rpsO
Sequence domains: Ribosomal protein S15

Small ribosomal subunit protein bS16 Chain: P

Molecule details ›

Chain: P
Length: 88 amino acids
Theoretical weight: 10.41 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: Q5SJH3 (Residues: 1-88; Coverage: 100%)

Gene names: TTHA1035, rpsP
Sequence domains: Ribosomal protein S16

Small ribosomal subunit protein uS17 Chain: Q

Molecule details ›

Chain: Q
Length: 105 amino acids
Theoretical weight: 12.33 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: P0DOY7 (Residues: 1-105; Coverage: 100%)

Gene names: TTHA1683, rpsQ
Sequence domains: Ribosomal protein S17

Small ribosomal subunit protein bS18 Chain: R

Molecule details ›

Chain: R
Length: 88 amino acids
Theoretical weight: 10.26 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: Q5SLQ0 (Residues: 1-88; Coverage: 100%)

Gene names: TTHA0243, rpsR
Sequence domains: Ribosomal protein S18

Small ribosomal subunit protein uS19 Chain: S

Molecule details ›

Chain: S
Length: 93 amino acids
Theoretical weight: 10.61 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: Q5SHP2 (Residues: 1-93; Coverage: 100%)

Gene names: TTHA1688, rpsS
Sequence domains: Ribosomal protein S19

Small ribosomal subunit protein bS20 Chain: T

Molecule details ›

Chain: T
Length: 106 amino acids
Theoretical weight: 11.74 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: P80380 (Residues: 1-106; Coverage: 100%)

Gene names: TTHA1397, rps20, rpsT
Sequence domains: Ribosomal protein S20

Small ribosomal subunit protein bTHX Chain: V

Molecule details ›

Chain: V
Length: 27 amino acids
Theoretical weight: 3.35 KDa
Source organism: Thermus thermophilus HB8
UniProt:

Canonical: Q5SIH3 (Residues: 1-27; Coverage: 100%)

Gene names: TTHA1396, rpsU
Sequence domains: 30S ribosomal protein Thx

Translation initiation factor IF-1 Chain: W

Molecule details ›

Chain: W
Length: 72 amino acids
Theoretical weight: 8.25 KDa
Source organism: Thermus thermophilus HB8
Expression system: Escherichia coli BL21(DE3)
UniProt:

Canonical: Q5SHR1 (Residues: 1-72; Coverage: 100%)

Gene names: TTHA1669, infA
Sequence domains: Translation initiation factor 1A / IF-1

Translation initiation factor IF-3 Chain: X

Molecule details ›

Chain: X
Length: 171 amino acids
Theoretical weight: 19.9 KDa
Source organism: Thermus thermophilus HB8
Expression system: Escherichia coli BL21(DE3)
UniProt:

Canonical: Q5SKU2 (Residues: 1-171; Coverage: 100%)

Gene names: TTHA0551, infC
Sequence domains:

Translation initiation factor IF-2 Chain: a

Molecule details ›

Chain: a
Length: 571 amino acids
Theoretical weight: 63.27 KDa
Source organism: Thermus thermophilus HB8
Expression system: Escherichia coli BL21(DE3)
UniProt: