› 5lqo

X-ray diffraction
1.87Å resolution

RNA duplex has central consecutive GA pairs flanked by G-C basepairs

Released:
DOI: 10.2210/pdb5lqo/pdb
PDB entry 5lqo coloured by chain, front view.
PDB entry 5lqo coloured by chain, side view.
PDB entry 5lqo coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Control of box C/D snoRNP assembly by N6-methylation of adenine.
Huang L, Ashraf S, Wang J, Lilley DM
OpenAccess logo EMBO Rep 18 1631-1645 (2017)
PMID: 28623187

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196947 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA (5'-R(*GP*(CBV)P*CP*GP*GP*AP*CP*GP*GP*C)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 10 nucleotides
Theoretical weight: 3.31 KDa
Source organism: Homo sapiens
Expression system: Not provided

Ligands and Environments

No bound ligands
1 modified residue:
Ligand CBV 2 x CBV

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: P43212
Unit cell:
a: 33.469Å b: 33.469Å c: 113.766Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.246 0.246 0.256
Expression system: Not provided

Quick links

Citations

11 review citations

The roles of structural dynamics in the cellular functions of RNAs.
Ganser et al. (2019)
10 more

1 mention without citation

Control of box C/D snoRNP assembly by N6-methylation of adenine.
Huang et al. (2017)