› 5m6g

X-ray diffraction
1.83Å resolution

Crystal structure Glucan 1,4-beta-glucosidase from Saccharopolyspora erythraea

Released:
DOI: 10.2210/pdb5m6g/pdb
PDB entry 5m6g coloured by chain, front view.
PDB entry 5m6g coloured by chain, side view.
PDB entry 5m6g coloured by chain, top view.
Source organism: Saccharopolyspora erythraea D
Entry authors: Gabdulkhakov A, Tishchenko S, Lisov A, Leontievsky A

Function and Biology Details

Reaction catalysed: 
Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-500239 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
beta-glucosidase Chain: A
Molecule details ›
Chain: A
Length: 615 amino acids
Theoretical weight: 65.38 KDa
Source organism: Saccharopolyspora erythraea D
Expression system: Komagataella phaffii GS115
UniProt:
  • Canonical: A4FNP6 (Residues: 1-615; Coverage: 100%)
Gene names: SACE_6502, celD
Sequence domains:
Structure domains: Glycoside hydrolase, family 3, N-terminal domain

Ligands and Environments

4 bound ligands:
Ligand MG 6 x MG
Ligand GOL 3 x GOL
Ligand PGE 1 x PGE
Ligand SOR 1 x SOR
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PETRA III, DESY BEAMLINE P11
Spacegroup: P212121
Unit cell:
a: 64.292Å b: 75.717Å c: 113.893Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.173 0.172 0.204
Expression system: Komagataella phaffii GS115

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