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Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Source organism: Spinacia oleracea
Biochemical function: structural constituent of ribosome
Biological process: translation
Cellular component: chloroplast

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GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF00347
Domain description: Ribosomal protein L6
Occurring in:
  1. Large ribosomal subunit protein uL6c
The deposited structure of PDB entry 5mlc contains 2 copies of Pfam domain PF00347 (Ribosomal protein L6) in Large ribosomal subunit protein uL6c. Showing 2 copies in chain H.

PF00831
Domain description: Ribosomal L29 protein
Occurring in:
  1. Large ribosomal subunit protein uL29c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00831 (Ribosomal L29 protein) in Large ribosomal subunit protein uL29c. Showing 1 copy in chain X [auth Z].

PF00830
Domain description: Ribosomal L28 family
Occurring in:
  1. Large ribosomal subunit protein bL28c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00830 (Ribosomal L28 family) in Large ribosomal subunit protein bL28c. Showing 1 copy in chain W [auth Y].

PF01016
Domain description: Ribosomal L27 protein
Occurring in:
  1. Large ribosomal subunit protein bL27c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF01016 (Ribosomal L27 protein) in Large ribosomal subunit protein bL27c. Showing 1 copy in chain V [auth X].

PF17136
Domain description: Ribosomal proteins 50S L24/mitochondrial 39S L24
Occurring in:
  1. Large ribosomal subunit protein uL24c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF17136 (Ribosomal proteins 50S L24/mitochondrial 39S L24) in Large ribosomal subunit protein uL24c. Showing 1 copy in chain U [auth W].

PF00467
Domain description: KOW motif
Occurring in:
  1. Large ribosomal subunit protein uL24c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00467 (KOW motif) in Large ribosomal subunit protein uL24c. Showing 1 copy in chain U [auth W].

PF00276
Domain description: Ribosomal protein L23
Occurring in:
  1. Large ribosomal subunit protein uL23c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00276 (Ribosomal protein L23) in Large ribosomal subunit protein uL23c. Showing 1 copy in chain T [auth V].

PF00237
Domain description: Ribosomal protein L22p/L17e
Occurring in:
  1. Large ribosomal subunit protein uL22c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00237 (Ribosomal protein L22p/L17e) in Large ribosomal subunit protein uL22c. Showing 1 copy in chain S [auth U].

PF00829
Domain description: Ribosomal prokaryotic L21 protein
Occurring in:
  1. Large ribosomal subunit protein bL21c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00829 (Ribosomal prokaryotic L21 protein) in Large ribosomal subunit protein bL21c. Showing 1 copy in chain R [auth T].

PF00453
Domain description: Ribosomal protein L20
Occurring in:
  1. Large ribosomal subunit protein bL20c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00453 (Ribosomal protein L20) in Large ribosomal subunit protein bL20c. Showing 1 copy in chain Q [auth S].

PF01245
Domain description: Ribosomal protein L19
Occurring in:
  1. Large ribosomal subunit protein bL19c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF01245 (Ribosomal protein L19) in Large ribosomal subunit protein bL19c. Showing 1 copy in chain P [auth R].

PF00861
Domain description: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Occurring in:
  1. Large ribosomal subunit protein uL18c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00861 (Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast) in Large ribosomal subunit protein uL18c. Showing 1 copy in chain O [auth Q].

PF01196
Domain description: Ribosomal protein L17
Occurring in:
  1. Large ribosomal subunit protein bL17c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF01196 (Ribosomal protein L17) in Large ribosomal subunit protein bL17c. Showing 1 copy in chain N [auth P].

PF00252
Domain description: Ribosomal protein L16p/L10e
Occurring in:
  1. Large ribosomal subunit protein uL16c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00252 (Ribosomal protein L16p/L10e) in Large ribosomal subunit protein uL16c. Showing 1 copy in chain M [auth O].

PF00828
Domain description: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Occurring in:
  1. Large ribosomal subunit protein uL15c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00828 (Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A) in Large ribosomal subunit protein uL15c. Showing 1 copy in chain L [auth N].

PF00238
Domain description: Ribosomal protein L14p/L23e
Occurring in:
  1. Large ribosomal subunit protein uL14c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00238 (Ribosomal protein L14p/L23e) in Large ribosomal subunit protein uL14c. Showing 1 copy in chain K [auth M].

PF00572
Domain description: Ribosomal protein L13
Occurring in:
  1. Large ribosomal subunit protein uL13c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00572 (Ribosomal protein L13) in Large ribosomal subunit protein uL13c. Showing 1 copy in chain J [auth L].

PF03948
Domain description: Ribosomal protein L9, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein bL9c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF03948 (Ribosomal protein L9, C-terminal domain) in Large ribosomal subunit protein bL9c. Showing 1 copy in chain I (this domain is out of the observed residue ranges!).

PF01281
Domain description: Ribosomal protein L9, N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein bL9c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF01281 (Ribosomal protein L9, N-terminal domain) in Large ribosomal subunit protein bL9c. Showing 1 copy in chain I.

PF00673
Domain description: ribosomal L5P family C-terminus
Occurring in:
  1. Large ribosomal subunit protein uL5c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00673 (ribosomal L5P family C-terminus) in Large ribosomal subunit protein uL5c. Showing 1 copy in chain G.

PF00281
Domain description: Ribosomal protein L5
Occurring in:
  1. Large ribosomal subunit protein uL5c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00281 (Ribosomal protein L5) in Large ribosomal subunit protein uL5c. Showing 1 copy in chain G.

PF00573
Domain description: Ribosomal protein L4/L1 family
Occurring in:
  1. Large ribosomal subunit protein uL4c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00573 (Ribosomal protein L4/L1 family) in Large ribosomal subunit protein uL4c. Showing 1 copy in chain F.

PF00297
Domain description: Ribosomal protein L3
Occurring in:
  1. Large ribosomal subunit protein uL3c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00297 (Ribosomal protein L3) in Large ribosomal subunit protein uL3c. Showing 1 copy in chain E.

PF03947
Domain description: Ribosomal Proteins L2, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL2cz/uL2cy
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF03947 (Ribosomal Proteins L2, C-terminal domain) in Large ribosomal subunit protein uL2cz/uL2cy. Showing 1 copy in chain D.

PF00181
Domain description: Ribosomal Proteins L2, RNA binding domain
Occurring in:
  1. Large ribosomal subunit protein uL2cz/uL2cy
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00181 (Ribosomal Proteins L2, RNA binding domain) in Large ribosomal subunit protein uL2cz/uL2cy. Showing 1 copy in chain D.

PF01765
Domain description: Ribosome recycling factor
Occurring in:
  1. Ribosome-recycling factor, chloroplastic
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF01765 (Ribosome recycling factor) in Ribosome-recycling factor, chloroplastic. Showing 1 copy in chain DA [auth 9].

PF17257
Domain description: Family of unknown function (DUF5323)
Occurring in:
  1. Large ribosomal subunit protein cL38
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF17257 (Family of unknown function (DUF5323)) in Large ribosomal subunit protein cL38. Showing 1 copy in chain FA [auth 8].

PF00444
Domain description: Ribosomal protein L36
Occurring in:
  1. Large ribosomal subunit protein bL36c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00444 (Ribosomal protein L36) in Large ribosomal subunit protein bL36c. Showing 1 copy in chain CA [auth 6].

PF01632
Domain description: Ribosomal protein L35
Occurring in:
  1. Large ribosomal subunit protein bL35c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF01632 (Ribosomal protein L35) in Large ribosomal subunit protein bL35c. Showing 1 copy in chain BA [auth 5].

PF00468
Domain description: Ribosomal protein L34
Occurring in:
  1. Large ribosomal subunit protein bL34c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00468 (Ribosomal protein L34) in Large ribosomal subunit protein bL34c. Showing 1 copy in chain AA [auth 4].

PF00471
Domain description: Ribosomal protein L33
Occurring in:
  1. Large ribosomal subunit protein bL33c
The deposited structure of PDB entry 5mlc contains 1 copy of Pfam domain PF00471 (Ribosomal protein L33) in Large ribosomal subunit protein bL33c. Showing 1 copy in chain Z [auth 3].

Rfam RNA families (Rfam)
RF02541
Domain description: Bacterial large subunit ribosomal RNA
Occurring in:
  1. 23S ribosomal RNA, chloroplastic
The deposited structure of PDB entry 5mlc contains 1 copy of Rfam domain RF02541 (Bacterial large subunit ribosomal RNA) in 23S ribosomal RNA, chloroplastic. Showing 1 copy in chain A.

RF00001
Domain description: 5S ribosomal RNA
Occurring in:
  1. 5S ribosomal RNA, chloroplastic
The deposited structure of PDB entry 5mlc contains 1 copy of Rfam domain RF00001 (5S ribosomal RNA) in 5S ribosomal RNA, chloroplastic. Showing 1 copy in chain B.

InterPro InterPro annotations
IPR005813
Domain description: Large ribosomal subunit protein bL20
Occurring in:
  1. Large ribosomal subunit protein bL20c
IPR000114
Domain description: Large ribosomal subunit protein uL16, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL16c
IPR001684
Domain description: Large ribosomal subunit protein bL27
Occurring in:
  1. Large ribosomal subunit protein bL27c
IPR001706
Domain description: Large ribosomal subunit protein bL35
Occurring in:
  1. Large ribosomal subunit protein bL35c
IPR001857
Domain description: Large ribosomal subunit protein bL19
Occurring in:
  1. Large ribosomal subunit protein bL19c
IPR019906
Domain description: Large ribosomal subunit protein uL6, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL6c
IPR003256
Domain description: Large ribosomal subunit protein uL24
Occurring in:
  1. Large ribosomal subunit protein uL24c
IPR000456
Domain description: Large ribosomal subunit protein bL17
Occurring in:
  1. Large ribosomal subunit protein bL17c
IPR005822
Domain description: Large ribosomal subunit protein uL13
Occurring in:
  1. Large ribosomal subunit protein uL13c
IPR036789
Domain description: Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL6c
IPR002661
Domain description: Ribosome recycling factor
Occurring in:
  1. Ribosome-recycling factor, chloroplastic
IPR000271
Domain description: Large ribosomal subunit protein bL34
Occurring in:
  1. Large ribosomal subunit protein bL34c
IPR001705
Domain description: Large ribosomal subunit protein bL33
Occurring in:
  1. Large ribosomal subunit protein bL33c
IPR001854
Domain description: Large ribosomal subunit protein uL29
Occurring in:
  1. Large ribosomal subunit protein uL29c
IPR013025
Domain description: Large ribosomal subunit protein uL23-like
Occurring in:
  1. Large ribosomal subunit protein uL23c
IPR013005
Domain description: Large ribosomal subunit protein uL4-like
Occurring in:
  1. Large ribosomal subunit protein uL4c
IPR019927
Domain description: Large ribosomal subunit protein uL3, bacterial/organelle-type
Occurring in:
  1. Large ribosomal subunit protein uL3c
IPR008991
Domain description: Translation protein SH3-like domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL2cz/uL2cy
  2. Large ribosomal subunit protein bL19c
  3. Large ribosomal subunit protein uL24c
IPR002171
Domain description: Large ribosomal subunit protein uL2
Occurring in:
  1. Large ribosomal subunit protein uL2cz/uL2cy
IPR036049
Domain description: Large ribosomal subunit protein uL29 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL29c
IPR001383
Domain description: Large ribosomal subunit protein bL28, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein bL28c
IPR026569
Domain description: Large ribosomal subunit protein bL28
Occurring in:
  1. Large ribosomal subunit protein bL28c
IPR005824
Domain description: KOW
Occurring in:
  1. Large ribosomal subunit protein uL24c
IPR001063
Domain description: Large ribosomal subunit protein uL22
Occurring in:
  1. Large ribosomal subunit protein uL22c
IPR005727
Domain description: Large ribosomal subunit protein uL22, bacterial/chloroplast-type
Occurring in:
  1. Large ribosomal subunit protein uL22c
IPR036394
Domain description: Ribosomal protein uL22 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL22c
IPR001787
Domain description: Large ribosomal subunit protein bL21
Occurring in:
  1. Large ribosomal subunit protein bL21c
IPR035566
Domain description: Ribosomal protein bL20, C-terminal
Occurring in:
  1. Large ribosomal subunit protein bL20c
IPR004389
Domain description: Large ribosomal subunit protein uL18, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL18c
IPR005484
Domain description: Large ribosomal subunit protein uL18
Occurring in:
  1. Large ribosomal subunit protein uL18c
IPR036373
Domain description: Large ribosomal subunit protein bL17 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL17c
IPR020798
Domain description: Large ribosomal subunit protein uL16, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL16c
IPR036920
Domain description: Large ribosomal subunit protein uL16 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL16c
IPR005749
Domain description: Large ribosomal subunit protein uL15, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL15c
IPR000218
Domain description: Large ribosomal subunit protein uL14
Occurring in:
  1. Large ribosomal subunit protein uL14c
IPR036899
Domain description: Large ribosomal subunit protein uL13 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL13c
IPR036791
Domain description: Large ribosomal subunit protein bL9, C-terminal domain superfamily
Occurring in:
  1. Large ribosomal subunit protein bL9c
IPR020070
Domain description: Large ribosomal subunit protein bL9, N-terminal
Occurring in:
  1. Large ribosomal subunit protein bL9c
IPR020594
Domain description: Large ribosomal subunit protein bL9, bacteria/chloroplast
Occurring in:
  1. Large ribosomal subunit protein bL9c
IPR020040
Domain description: Large ribosomal subunit protein uL6, alpha-beta domain
Occurring in:
  1. Large ribosomal subunit protein uL6c
IPR002132
Domain description: Large ribosomal subunit protein uL5
Occurring in:
  1. Large ribosomal subunit protein uL5c
IPR022803
Domain description: Large ribosomal subunit protein uL5 domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL5c
IPR023574
Domain description: Large ribosomal subunit protein uL4 domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL4c
IPR022669
Domain description: Large ribosomal subunit protein uL2, C-terminal
Occurring in:
  1. Large ribosomal subunit protein uL2cz/uL2cy
IPR014722
Domain description: Large ribosomal subunit protein uL2, domain 2
Occurring in:
  1. Large ribosomal subunit protein uL2cz/uL2cy
  2. Large ribosomal subunit protein uL24c
IPR012340
Domain description: Nucleic acid-binding, OB-fold
Occurring in:
  1. Large ribosomal subunit protein uL2cz/uL2cy
IPR005880
Domain description: Large ribosomal subunit protein uL2, bacterial/organellar-type
Occurring in:
  1. Large ribosomal subunit protein uL2cz/uL2cy
IPR036191
Domain description: RRF superfamily
Occurring in:
  1. Ribosome-recycling factor, chloroplastic
IPR020526
Domain description: Large ribosomal subunit protein cL38
Occurring in:
  1. Large ribosomal subunit protein cL38
IPR000473
Domain description: Large ribosomal subunit protein bL36
Occurring in:
  1. Large ribosomal subunit protein bL36c
IPR037229
Domain description: Large ribosomal subunit protein bL35 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL35c
IPR011332
Domain description: Zinc-binding ribosomal protein
Occurring in:
  1. Large ribosomal subunit protein bL32c
  2. Large ribosomal subunit protein bL33c
IPR034704
Domain description: Large ribosomal subunit protein bL28/bL31-like superfamily
Occurring in:
  1. Large ribosomal subunit protein bL28c
IPR037147
Domain description: Large ribosomal subunit protein bL28 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL28c
IPR018261
Domain description: Large ribosomal subunit protein bL27, conserved site
Occurring in:
  1. Large ribosomal subunit protein bL27c
IPR041988
Domain description: Large ribosomal subunit protein uL24, KOW domain
Occurring in:
  1. Large ribosomal subunit protein uL24c
IPR005825
Domain description: Large ribosomal subunit protein uL24, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL24c
IPR012678
Domain description: Ribosomal protein uL23/eL15/eS24 core domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL23c
IPR012677
Domain description: Nucleotide-binding alpha-beta plait domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL23c
IPR018260
Domain description: Large ribosomal subunit protein uL22, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL22c
IPR047867
Domain description: Large ribosomal subunit protein uL22, bacterial/organelle-type
Occurring in:
  1. Large ribosomal subunit protein uL22c
IPR018258
Domain description: Large ribosomal subunit protein bL21, conserved site
Occurring in:
  1. Large ribosomal subunit protein bL21c
IPR028909
Domain description: Large ribosomal subunit protein bL21-like
Occurring in:
  1. Large ribosomal subunit protein bL21c
IPR036164
Domain description: Large ribosomal subunit protein bL21-like superfamily
Occurring in:
  1. Large ribosomal subunit protein bL21c
IPR038657
Domain description: Large ribosomal subunit protein bL19 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL19c
IPR016180
Domain description: Large ribosomal subunit protein uL16 domain
Occurring in:
  1. Large ribosomal subunit protein uL16c
IPR047873
Domain description: Large ribosomal subunit protein uL16
Occurring in:
  1. Large ribosomal subunit protein uL16c
IPR001196
Domain description: Large ribosomal subunit protein uL15, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL15c
IPR021131
Domain description: Large ribosomal subunit protein uL15/eL18
Occurring in:
  1. Large ribosomal subunit protein uL15c
IPR036227
Domain description: Large ribosomal subunit protein uL15/eL18 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL15c
IPR030878
Domain description: Large ribosomal subunit protein uL15
Occurring in:
  1. Large ribosomal subunit protein uL15c
IPR019972
Domain description: Large ribosomal subunit protein uL14, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL14c
IPR036853
Domain description: Large ribosomal subunit protein uL14 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL14c
IPR005745
Domain description: Large ribosomal subunit protein uL14, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL14c
IPR023563
Domain description: Large ribosomal subunit protein uL13, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL13c
IPR005823
Domain description: Large ribosomal subunit protein uL13, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL13c
IPR020069
Domain description: Large ribosomal subunit protein bL9, C-terminal
Occurring in:
  1. Large ribosomal subunit protein bL9c
IPR036935
Domain description: Large ribosomal subunit protein bL9, N-terminal domain superfamily
Occurring in:
  1. Large ribosomal subunit protein bL9c
IPR009027
Domain description: Large ribosomal subunit protein bL9/RNase H1, N-terminal
Occurring in:
  1. Large ribosomal subunit protein bL9c
IPR000244
Domain description: Large ribosomal subunit protein bL9
Occurring in:
  1. Large ribosomal subunit protein bL9c
IPR002358
Domain description: Large ribosomal subunit protein uL6, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL6c
IPR000702
Domain description: Large ribosomal subunit protein uL6-like
Occurring in:
  1. Large ribosomal subunit protein uL6c
IPR031309
Domain description: Large ribosomal subunit protein uL5, C-terminal
Occurring in:
  1. Large ribosomal subunit protein uL5c
IPR020929
Domain description: Large ribosomal subunit protein uL5, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL5c
IPR031310
Domain description: Large ribosomal subunit protein uL5, N-terminal
Occurring in:
  1. Large ribosomal subunit protein uL5c
IPR020930
Domain description: Large ribosomal subunit protein uL5, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL5c
IPR002136
Domain description: Large ribosomal subunit protein uL4
Occurring in:
  1. Large ribosomal subunit protein uL4c
IPR019926
Domain description: Large ribosomal subunit protein uL3, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL3c
IPR000597
Domain description: Large ribosomal subunit protein uL3
Occurring in:
  1. Large ribosomal subunit protein uL3c
IPR009000
Domain description: Translation protein, beta-barrel domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL3c
IPR022671
Domain description: Large ribosomal subunit protein uL2, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL2cz/uL2cy
IPR014726
Domain description: Large ribosomal subunit protein uL2, domain 3
Occurring in:
  1. Large ribosomal subunit protein uL2cz/uL2cy
IPR022666
Domain description: Large ribosomal subunit protein uL2, RNA-binding domain
Occurring in:
  1. Large ribosomal subunit protein uL2cz/uL2cy
IPR023584
Domain description: Ribosome recycling factor domain
Occurring in:
  1. Ribosome-recycling factor, chloroplastic
IPR040307
Domain description: Large ribosomal subunit protein cL37
Occurring in:
  1. Large ribosomal subunit protein cL37 alpha
IPR035977
Domain description: Large ribosomal subunit protein bL36 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL36c
IPR018265
Domain description: Large ribosomal subunit protein bL35, conserved site
Occurring in:
  1. Large ribosomal subunit protein bL35c
IPR021137
Domain description: Large ribosomal subunit protein bL35-like
Occurring in:
  1. Large ribosomal subunit protein bL35c
IPR018264
Domain description: Large ribosomal subunit protein bL33, conserved site
Occurring in:
  1. Large ribosomal subunit protein bL33c
IPR038584
Domain description: Large ribosomal subunit protein bL33 superfamily
Occurring in:
  1. Large ribosomal subunit protein bL33c
IPR044958
Domain description: Large ribosomal subunit protein bL32, plant/cyanobacteria type
Occurring in:
  1. Large ribosomal subunit protein bL32c
IPR002677
Domain description: Large ribosomal subunit protein bL32
Occurring in:
  1. Large ribosomal subunit protein bL32c

Structure domains

CATH CATH domains
3.90.930.12
Class: Alpha Beta
Architecture: Alpha-Beta Complex
Topology: Outer Surface Protein A; domain 3
Homology: Ribosomal protein L6, alpha-beta domain
Occurring in:
  1. Large ribosomal subunit protein uL6c
The deposited structure of PDB entry 5mlc contains 2 copies of CATH domain 3.90.930.12 (Outer Surface Protein A; domain 3) in Large ribosomal subunit protein uL6c. Showing 2 copies in chain H.
2.30.170.40
Class: Mainly Beta
Architecture: Roll
Topology: Ribosomal Protein L24e; Chain: T;
Homology: Ribosomal protein L28/L24
Occurring in:
  1. Large ribosomal subunit protein bL28c
The deposited structure of PDB entry 5mlc contains 1 copy of CATH domain 2.30.170.40 (Ribosomal Protein L24e; Chain: T;) in Large ribosomal subunit protein bL28c. Showing 1 copy in chain W [auth Y].
3.30.70.330
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Alpha-Beta Plaits
Homology: Alpha-Beta Plaits
Occurring in:
  1. Large ribosomal subunit protein uL23c
The deposited structure of PDB entry 5mlc contains 1 copy of CATH domain 3.30.70.330 (Alpha-Beta Plaits) in Large ribosomal subunit protein uL23c. Showing 1 copy in chain T [auth V].
3.90.470.10
Class: Alpha Beta
Architecture: Alpha-Beta Complex
Topology: Ribosomal Protein L22; Chain A
Homology: Ribosomal protein L22/L17
Occurring in:
  1. Large ribosomal subunit protein uL22c
The deposited structure of PDB entry 5mlc contains 1 copy of CATH domain 3.90.470.10 (Ribosomal Protein L22; Chain A) in Large ribosomal subunit protein uL22c. Showing 1 copy in chain S [auth U].
3.30.420.100
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Nucleotidyltransferase; domain 5
Homology: Nucleotidyltransferase; domain 5
Occurring in:
  1. Large ribosomal subunit protein uL18c
The deposited structure of PDB entry 5mlc contains 1 copy of CATH domain 3.30.420.100 (Nucleotidyltransferase; domain 5) in Large ribosomal subunit protein uL18c. Showing 1 copy in chain O [auth Q].
3.90.1030.10
Class: Alpha Beta
Architecture: Alpha-Beta Complex
Topology: 50s Ribosomal Protein L17; Chain: A,
Homology: Ribosomal protein L17
Occurring in:
  1. Large ribosomal subunit protein bL17c
The deposited structure of PDB entry 5mlc contains 1 copy of CATH domain 3.90.1030.10 (50s Ribosomal Protein L17; Chain: A,) in Large ribosomal subunit protein bL17c. Showing 1 copy in chain N [auth P].
3.90.1170.10
Class: Alpha Beta
Architecture: Alpha-Beta Complex
Topology: Aldehyde Oxidoreductase; domain 3
Homology: Ribosomal protein L10e/L16
Occurring in:
  1. Large ribosomal subunit protein uL16c
The deposited structure of PDB entry 5mlc contains 1 copy of CATH domain 3.90.1170.10 (Aldehyde Oxidoreductase; domain 3) in Large ribosomal subunit protein uL16c. Showing 1 copy in chain M [auth O].
2.40.150.20
Class: Mainly Beta
Architecture: Beta Barrel
Topology: Ribosomal Protein L14
Homology: Ribosomal protein L14
Occurring in:
  1. Large ribosomal subunit protein uL14c
The deposited structure of PDB entry 5mlc contains 1 copy of CATH domain 2.40.150.20 (Ribosomal Protein L14) in Large ribosomal subunit protein uL14c. Showing 1 copy in chain K [auth M].
3.30.1440.10
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: 50s Ribosomal Protein L5; Chain: A,
Homology: 50s Ribosomal Protein L5; Chain: A,
Occurring in:
  1. Large ribosomal subunit protein uL5c
The deposited structure of PDB entry 5mlc contains 1 copy of CATH domain 3.30.1440.10 (50s Ribosomal Protein L5; Chain: A,) in Large ribosomal subunit protein uL5c. Showing 1 copy in chain G.
2.40.50.140
Class: Mainly Beta
Architecture: Beta Barrel
Topology: OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homology: Nucleic acid-binding proteins
Occurring in:
  1. Large ribosomal subunit protein uL2cz/uL2cy
The deposited structure of PDB entry 5mlc contains 1 copy of CATH domain 2.40.50.140 (OB fold (Dihydrolipoamide Acetyltransferase, E2P)) in Large ribosomal subunit protein uL2cz/uL2cy. Showing 1 copy in chain D.
1.10.132.20
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Topoisomerase I; Chain A, domain 4
Homology: Ribosome-recycling factor
Occurring in:
  1. Ribosome-recycling factor, chloroplastic
The deposited structure of PDB entry 5mlc contains 1 copy of CATH domain 1.10.132.20 (Topoisomerase I; Chain A, domain 4) in Ribosome-recycling factor, chloroplastic. Showing 1 copy in chain DA [auth 9].
1.10.287.3980
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Helix Hairpins
Homology: Helix Hairpins
Occurring in:
  1. Large ribosomal subunit protein bL34c
The deposited structure of PDB entry 5mlc contains 1 copy of CATH domain 1.10.287.3980 (Helix Hairpins) in Large ribosomal subunit protein bL34c. Showing 1 copy in chain AA [auth 4].
2.20.28.120
Class: Mainly Beta
Architecture: Single Sheet
Topology: Rubrerythrin, domain 2
Homology: Ribosomal protein L33
Occurring in:
  1. Large ribosomal subunit protein bL33c
The deposited structure of PDB entry 5mlc contains 1 copy of CATH domain 2.20.28.120 (Rubrerythrin, domain 2) in Large ribosomal subunit protein bL33c. Showing 1 copy in chain Z [auth 3].

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