5ms0

Electron Microscopy
9.8Å resolution

pseudo-atomic model of the RNA polymerase lambda-based antitermination complex solved by cryo-EM

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetradecamer (preferred)
PDBe Complex ID:
PDB-CPX-119033 (preferred)
Entry contents:
9 distinct polypeptide molecules
2 distinct DNA molecules
2 distinct RNA molecules
Macromolecules (13 distinct):
Antitermination protein N Chain: N
Molecule details ›
Chain: N
Length: 85 amino acids
Theoretical weight: 9.88 KDa
Source organism: Lambdavirus lambda
Expression system: Escherichia coli
UniProt:
  • Canonical: P03045 (Residues: 3-86; Coverage: 79%)
Gene names: N, lambdap49
Sequence domains: 36-mer N-terminal peptide of the N protein (N36)
DNA-directed RNA polymerase subunit alpha Chains: A, B
Molecule details ›
Chains: A, B
Length: 329 amino acids
Theoretical weight: 36.56 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt:
  • Canonical: P0A7Z4 (Residues: 1-329; Coverage: 100%)
Gene names: JW3257, b3295, pez, phs, rpoA, sez
Sequence domains:
DNA-directed RNA polymerase subunit beta Chain: C
Molecule details ›
Chain: C
Length: 1342 amino acids
Theoretical weight: 150.8 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P0A8V2 (Residues: 1-1342; Coverage: 100%)
Gene names: JW3950, b3987, groN, nitB, rif, ron, rpoB, stl, stv, tabD
Sequence domains:
DNA-directed RNA polymerase subunit beta' Chain: D
Molecule details ›
Chain: D
Length: 1416 amino acids
Theoretical weight: 156.54 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P0A8T7 (Residues: 1-1407; Coverage: 100%)
Gene names: JW3951, b3988, rpoC, tabB
Sequence domains:
Small ribosomal subunit protein uS10 Chain: E
Molecule details ›
Chain: E
Length: 100 amino acids
Theoretical weight: 11.34 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P0A7R5 (Residues: 4-103; Coverage: 97%)
Gene names: JW3283, b3321, nusE, rpsJ
Sequence domains: Ribosomal protein S10p/S20e
Transcription termination/antitermination protein NusG Chain: F
Molecule details ›
Chain: F
Length: 183 amino acids
Theoretical weight: 20.69 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P0AFG0 (Residues: 1-181; Coverage: 100%)
Gene names: JW3945, b3982, nusG
Sequence domains:
Transcription antitermination protein NusB Chain: L
Molecule details ›
Chain: L
Length: 139 amino acids
Theoretical weight: 15.71 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P0A780 (Residues: 1-139; Coverage: 100%)
Gene names: JW0406, b0416, groNB, nusB, ssyB
Sequence domains: NusB family
Transcription termination/antitermination protein NusA Chain: M
Molecule details ›
Chain: M
Length: 497 amino acids
Theoretical weight: 55.06 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P0AFF6 (Residues: 1-495; Coverage: 100%)
Gene names: JW3138, b3169, nusA
Sequence domains:
DNA-directed RNA polymerase subunit omega Chain: O
Molecule details ›
Chain: O
Length: 91 amino acids
Theoretical weight: 10.25 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P0A800 (Residues: 1-91; Coverage: 100%)
Gene names: JW3624, b3649, rpoZ
Sequence domains: RNA polymerase Rpb6
DNAI Chain: I
Molecule details ›
Chain: I
Length: 27 nucleotides
Theoretical weight: 8.36 KDa
DNAII Chain: J
Molecule details ›
Chain: J
Length: 39 nucleotides
Theoretical weight: 11.94 KDa
nascent RNA Chain: R
Molecule details ›
Chain: R
Length: 29 nucleotides
Theoretical weight: 9.34 KDa
RNA transcription bubble Chain: H
Molecule details ›
Chain: H
Length: 14 nucleotides
Theoretical weight: 4.49 KDa

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 9.8Å
Relevant EMDB volumes: EMD-3561
Expression system: Escherichia coli