GDP

GUANOSINE-5'-DIPHOSPHATE

Formula: C10 H15 N5 O11 P2
Molecular weight: 443 Da
One-letter code: G

Environment details NEW

GDP 1003 bound to chain i
hydrophobic
negatively charged
aromatic
polar
cystein
water
positively charged
other
glycine
bound molecule
glycans (SNFG)

aromatic
clashes

covalent
electrostatic

metal hydrophobic

vdw
ASN108GLY110GLY112LYS113THR114THR115LYS119ARG139ARG141GLN147THR248LYS249ASP251GLY274GLY276GLU277ALF1001ALF1001MG1002
The above 2D and 3D (Mol*) views of ligand interactions use quaternary structure derived from the PDB entry.
Please note:
  • Some chain IDs in the tooltip are followed by a number in square brackets. This number corresponds to the operation ID (mmCIF ‘oper_expression’) used to transform the chain.
  • The structure seen in Mol* (3D view) was protonated using ChimeraX.
  • Interactions were calculated using Arpeggio (see details for interaction types).
  • The colour scheme used is consistent with Clustal X.