PDB 5ngm structure summary ‹ Protein Data Bank in Europe (PDBe)

Function and Biology Details

Biochemical function:

structural constituent of ribosome

Biological process:

translation

Cellular component:

ribosome

Sequence domains:

184 more domains

Structure analysis Details

Assembly composition:

hetero 52-mer (preferred)

PDBe Complex ID:

PDB-CPX-100541 (preferred)

Entry contents:

49 distinct polypeptide molecules
3 distinct RNA molecules

Macromolecules (52 distinct):

Small ribosomal subunit protein uS2 Chain: Ab

Molecule details ›

Chain: Ab
Length: 255 amino acids
Theoretical weight: 29.14 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UDU1 (Residues: 1-255; Coverage: 100%)

Gene names: CD116_13080, ERS140147_00130, NCTC13712_01201, rpsB
Sequence domains: Ribosomal protein S2

Small ribosomal subunit protein uS3 Chain: Ac

Molecule details ›

Chain: Ac
Length: 217 amino acids
Theoretical weight: 24.14 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UU26 (Residues: 1-217; Coverage: 100%)

Gene names: CD116_01830, ERS140147_00632, NCTC13712_02192, rpsC
Sequence domains:

Small ribosomal subunit protein uS4 Chain: Ad

Molecule details ›

Chain: Ad
Length: 200 amino acids
Theoretical weight: 23.05 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8TVK2 (Residues: 1-200; Coverage: 100%)

Gene names: BN1321_260351, CV021_05220, E1948_04080, E1948_08795, EP54_00845, EQ90_06385, FAF17_15630, G6W63_12880, G6Y24_12375, GO814_13650, GO942_04570, GQX37_04495, GZ156_10760, H2639_00770, HMPREF3211_02281, M1K003_2482, NCTC10702_02696, NCTC13131_06120, NCTC5664_03740, NCTC6133_02294, NCTC7972_00210, QU38_08340, SAMEA1531744_00061, SAMEA2078260_02121, SAMEA2078588_01950, SAMEA2080344_02017, SAMEA2081063_02008, SAMEA4008575_02112, SAMEA70146418_02346, SAMEA70153168_00150, SAMEA70245418_00710, rpsD, rpsD_2
Sequence domains:

Small ribosomal subunit protein uS5 Chain: Ae

Molecule details ›

Chain: Ae
Length: 166 amino acids
Theoretical weight: 17.77 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8TUC9 (Residues: 1-166; Coverage: 100%)

Gene names: A6760_13395, BN1321_380065, CV021_18000, E1948_03100, E1948_11795, EP54_02160, EQ90_01205, FAF17_03780, G6W63_05945, G6Y24_08815, GO793_01700, GO814_07325, GO941_09035, GO942_01065, GQX37_14860, GZ156_01255, H2639_07585, HMPREF3211_01558, M1K003_0776, NCTC13131_01576, NCTC6133_03023, NCTC7878_01027, NCTC7972_02477, QU38_04935, SAMEA1531725_01467, SAMEA1531744_00345, SAMEA2078260_00052, SAMEA2078588_00359, SAMEA2080344_00568, SAMEA2081063_01561, SAMEA4008575_01048, SAMEA70146418_00500, SAMEA70153168_01219, SAMEA70245418_00552, rpsE, rpsE_1
Sequence domains:

Small ribosomal subunit protein bS6 Chain: Af

Molecule details ›

Chain: Af
Length: 98 amino acids
Theoretical weight: 11.61 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8TPC6 (Residues: 1-98; Coverage: 100%)

Gene names: CD116_05330, ERS140147_02571, NCTC13712_00312, rpsF
Sequence domains: Ribosomal protein S6

Small ribosomal subunit protein uS7 Chain: Ag

Molecule details ›

Chain: Ag
Length: 156 amino acids
Theoretical weight: 17.83 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077VHU6 (Residues: 1-156; Coverage: 100%)

Gene names: CD116_12315, ERS140147_01024, NCTC13712_00499, rpsG
Sequence domains: Ribosomal protein S7p/S5e

Small ribosomal subunit protein uS8 Chain: Ah

Molecule details ›

Chain: Ah
Length: 132 amino acids
Theoretical weight: 14.85 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8U8T8 (Residues: 1-132; Coverage: 100%)

Gene names: CD116_01870, ERS140147_00624, NCTC13712_02184, rpsH
Sequence domains: Ribosomal protein S8

Small ribosomal subunit protein uS9 Chain: Ai

Molecule details ›

Chain: Ai
Length: 132 amino acids
Theoretical weight: 14.86 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A0K7UQP6 (Residues: 1-132; Coverage: 100%)

Gene names: CD116_01965, ERS140147_00604, NCTC13712_02164, rpsI
Sequence domains: Ribosomal protein S9/S16

Small ribosomal subunit protein uS10 Chain: Aj

Molecule details ›

Chain: Aj
Length: 102 amino acids
Theoretical weight: 11.6 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A0H2K0A0 (Residues: 1-102; Coverage: 100%)

Gene names: CD116_01795, ERS140147_00639, NCTC13712_02199, rpsJ
Sequence domains: Ribosomal protein S10p/S20e

Small ribosomal subunit protein uS11 Chain: Ak

Molecule details ›

Chain: Ak
Length: 129 amino acids
Theoretical weight: 13.91 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UKD6 (Residues: 1-129; Coverage: 100%)

Gene names: CD116_01925, ERS140147_00613, NCTC13712_02173, rpsK
Sequence domains: Ribosomal protein S11

Small ribosomal subunit protein uS12 Chain: Al

Molecule details ›

Chain: Al
Length: 137 amino acids
Theoretical weight: 15.32 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8U1C6 (Residues: 1-137; Coverage: 100%)

Gene names: CD116_12320, ERS140147_01023, NCTC13712_00498, rpsL
Sequence domains: Ribosomal protein S12/S23

Small ribosomal subunit protein uS13 Chain: Am

Molecule details ›

Chain: Am
Length: 121 amino acids
Theoretical weight: 13.75 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8U8U6 (Residues: 1-121; Coverage: 100%)

Gene names: A6760_13360, BN1321_380059, CV021_18035, E1948_03135, E1948_11760, EP54_02195, EQ90_01170, FAF17_03745, G6W63_05980, G6Y24_08780, GO793_04170, GO814_07290, GO941_10770, GO942_01030, GQX37_14895, GZ156_01290, H2639_07550, HMPREF3211_01551, M1K003_0769, NCTC13131_01569, NCTC5664_01688, NCTC6133_03016, NCTC7878_01035, NCTC7972_02484, QU38_04900, SAMEA1531725_01474, SAMEA1531744_00338, SAMEA2078260_00045, SAMEA2078588_00352, SAMEA2080344_00575, SAMEA2081063_01568, SAMEA4008575_01055, SAMEA70146418_00507, SAMEA70153168_01212, SAMEA70245418_00559, rpsM, rpsM_1
Sequence domains: Ribosomal protein S13/S18

Small ribosomal subunit protein uS14 Chain: An

Molecule details ›

Chain: An
Length: 61 amino acids
Theoretical weight: 7.32 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UGW7 (Residues: 1-61; Coverage: 100%)

Gene names: CD116_01865, ERS140147_00625, NCTC13712_02185, rpsN, rpsN1, rpsN_1, rpsZ
Sequence domains: Ribosomal protein S14p/S29e

Small ribosomal subunit protein uS15 Chain: Ao

Molecule details ›

Chain: Ao
Length: 89 amino acids
Theoretical weight: 10.63 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8U6H8 (Residues: 1-89; Coverage: 100%)

Gene names: A6760_04710, BN1321_240121, CV021_03145, E1948_05660, E1948_06230, EP54_08785, EQ90_07875, FAF17_12360, G6W63_11835, G6Y24_07945, GO793_17005, GO814_06080, GO941_10135, GO942_07530, GQX37_06725, GZ156_08325, H2639_04650, HMPREF3211_01317, M1K003_0114, NCTC10702_02013, NCTC13131_00369, NCTC5664_02205, NCTC6133_01555, NCTC7878_01824, NCTC7972_00675, QU38_12725, SAMEA1531725_01534, SAMEA1531744_01573, SAMEA2078260_01474, SAMEA2078588_01661, SAMEA2080344_01643, SAMEA2081063_01322, SAMEA4008575_01811, SAMEA70146418_02592, SAMEA70153168_01835, SAMEA70245418_01921, rpsO, rpsO_1
Sequence domains: Ribosomal protein S15

Small ribosomal subunit protein bS16 Chain: Ap

Molecule details ›

Chain: Ap
Length: 91 amino acids
Theoretical weight: 10.25 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8U6K4 (Residues: 1-91; Coverage: 100%)

Gene names: A6760_04900, BN1321_240084, CV021_11345, E1948_05475, E1948_06040, EP54_08595, EQ90_08065, FAF17_11165, G6W63_11660, G6Y24_13750, GO793_08775, GO814_06265, GO941_12470, GO942_07345, GQX37_06910, GZ156_09605, HMPREF3211_01282, M1K003_0079, NCTC10702_01954, NCTC13131_00404, NCTC5664_02269, NCTC6133_01505, NCTC7878_01880, NCTC7972_00712, QU38_12530, SAMEA1531725_01569, SAMEA1531744_01538, SAMEA2078260_01509, SAMEA2078588_01626, SAMEA2080344_01678, SAMEA2081063_01357, SAMEA4008575_01846, SAMEA70146418_01672, SAMEA70153168_01800, SAMEA70245418_01958, rpsP, rpsP_1
Sequence domains: Ribosomal protein S16

Small ribosomal subunit protein uS17 Chain: Aq

Molecule details ›

Chain: Aq
Length: 87 amino acids
Theoretical weight: 10.2 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077VLD5 (Residues: 1-87; Coverage: 100%)

Gene names: CD116_01845, ERS140147_00629, NCTC13712_02189, rpsQ
Sequence domains: Ribosomal protein S17

Small ribosomal subunit protein bS18 Chain: Ar

Molecule details ›

Chain: Ar
Length: 80 amino acids
Theoretical weight: 9.33 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UZF4 (Residues: 1-80; Coverage: 100%)

Gene names: CD116_05340, ERS140147_02569, NCTC13712_00314, rpsR
Sequence domains: Ribosomal protein S18

Small ribosomal subunit protein uS19 Chain: As

Molecule details ›

Chain: As
Length: 92 amino acids
Theoretical weight: 10.64 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077V0P8 (Residues: 1-92; Coverage: 100%)

Gene names: CD116_01820, ERS140147_00634, NCTC13712_02194, rpsS
Sequence domains: Ribosomal protein S19

Small ribosomal subunit protein bS20 Chain: At

Molecule details ›

Chain: At
Length: 83 amino acids
Theoretical weight: 9.04 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8UXC3 (Residues: 1-83; Coverage: 100%)

Gene names: A6760_01160, BN1321_260224, CV021_16415, E1948_08120, E1948_09560, EP54_13180, EQ90_02045, FAF17_08750, G6W63_07460, G6Y24_01100, GO793_14835, GO814_12840, GO941_07315, GO942_05225, GQX37_10670, GZ156_06525, H2639_01455, HMPREF3211_01736, M1K003_1337, NCTC10702_02505, NCTC13131_01905, NCTC5664_03536, NCTC7878_01385, QU38_09005, SAMEA1531725_00230, SAMEA1531744_00187, SAMEA2078260_02721, SAMEA2078588_02759, SAMEA2080344_02727, SAMEA2081063_02772, SAMEA4008575_01402, SAMEA70146418_01084, SAMEA70153168_00278, SAMEA70245418_00840, rpsT, rpsT_1
Sequence domains: Ribosomal protein S20

Small ribosomal subunit protein bS21 Chain: Au

Molecule details ›

Chain: Au
Length: 58 amino acids
Theoretical weight: 6.99 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UHS1 (Residues: 1-58; Coverage: 100%)

Gene names: CD116_08465, ERS140147_00997, NCTC13712_01572, rpsU
Sequence domains: Ribosomal protein S21

Ribosome hibernation promoting factor Chain: Av

Molecule details ›

Chain: Av
Length: 190 amino acids
Theoretical weight: 22.24 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: D2Z097 (Residues: 1-190; Coverage: 100%)

Gene names: A6760_03745, BN1321_170086, CV021_09125, E1948_01195, E1948_03840, EP54_02760, EQ90_03750, FAF17_02490, G6W63_01690, G6Y24_04360, GO793_15105, GO814_03380, GO941_10480, GO942_03205, GQX37_05310, GZ156_03940, H2639_09620, HMPREF3211_01097, M1K003_1172, NCTC13131_00825, NCTC6133_00902, NCTC7878_03405, NCTC7972_01151, QU38_10810, SAMEA1531725_00910, SAMEA1531744_00621, SAMEA2078260_01067, SAMEA2078588_00805, SAMEA2080344_01041, SAMEA2081063_00595, SAMEA4008575_00345, SAMEA70146418_00725, SAMEA70153168_02155, SAMEA70245418_01756, hpf, raiA, yfiA
Sequence domains:

Large ribosomal subunit protein uL2 Chain: AC

Molecule details ›

Chain: AC
Length: 277 amino acids
Theoretical weight: 30.22 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077W1J0 (Residues: 1-277; Coverage: 100%)

Gene names: CD116_01815, ERS140147_00635, NCTC13712_02195, rplB
Sequence domains:

Large ribosomal subunit protein uL3 Chain: AD

Molecule details ›

Chain: AD
Length: 220 amino acids
Theoretical weight: 23.76 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8U3W0 (Residues: 1-220; Coverage: 100%)

Gene names: CD116_01800, ERS140147_00638, NCTC13712_02198, rplC
Sequence domains: Ribosomal protein L3

Large ribosomal subunit protein uL4 Chain: AE

Molecule details ›

Chain: AE
Length: 207 amino acids
Theoretical weight: 22.5 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8TRC7 (Residues: 1-207; Coverage: 100%)

Gene names: A6760_13475, BN1321_380081, CV021_17920, E1948_03020, E1948_11875, EP54_02080, EQ90_01285, FAF17_03860, G6W63_05865, G6Y24_08895, GO793_01620, GO814_07405, GO941_08955, GO942_01145, GQX37_14780, GZ156_01175, H2639_07665, HMPREF3211_01574, M1K003_0792, NCTC10702_03547, NCTC13131_01592, NCTC6133_03039, NCTC7972_02461, QU38_05015, SAMEA2078260_00068, SAMEA2078588_00375, SAMEA2080344_00552, SAMEA2081063_01545, SAMEA4008575_01032, SAMEA70146418_00484, SAMEA70153168_01235, SAMEA70245418_00536, rplD, rplD_1
Sequence domains: Ribosomal protein L4/L1 family

Large ribosomal subunit protein uL5 Chain: AF

Molecule details ›

Chain: AF
Length: 179 amino acids
Theoretical weight: 20.3 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8TUC3 (Residues: 1-179; Coverage: 100%)

Gene names: A6760_13420, BN1321_380070, E1948_03075, E1948_11820, EP54_02135, EQ90_01230, FAF17_03805, G6W63_05920, G6Y24_08840, GO793_01675, GO814_07350, GO941_09010, GO942_01090, GQX37_14835, GZ156_01230, H2639_07610, M1K003_0781, NCTC13131_01581, NCTC5664_01674, NCTC7878_01021, NCTC7972_02472, QU38_04960, SAMEA1531725_01462, SAMEA1531744_00350, SAMEA2078260_00057, SAMEA2078588_00364, SAMEA2080344_00563, SAMEA2081063_01556, SAMEA4008575_01043, SAMEA70146418_00495, SAMEA70153168_01224, SAMEA70245418_00547, rplE, rplE_1
Sequence domains:

Large ribosomal subunit protein uL6 Chain: AG

Molecule details ›

Chain: AG
Length: 178 amino acids
Theoretical weight: 19.82 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8U3X2 (Residues: 1-178; Coverage: 100%)

Gene names: A6760_13405, CV021_17990, E1948_03090, E1948_11805, EP54_02150, EQ90_01215, FAF17_03790, G6W63_05935, G6Y24_08825, GO814_07335, GO941_09025, GO942_01075, GQX37_14850, GZ156_01245, H2639_07595, HMPREF3211_01560, M1K003_0778, NCTC13131_01578, NCTC5664_01677, NCTC6133_03025, NCTC7972_02475, QU38_04945, SAMEA1531725_01465, SAMEA1531744_00347, SAMEA2078260_00054, SAMEA2078588_00361, SAMEA2080344_00566, SAMEA2081063_01559, SAMEA4008575_01046, SAMEA70146418_00498, SAMEA70153168_01221, SAMEA70245418_00550, rplF, rplF_1
Sequence domains: Ribosomal protein L6

Large ribosomal subunit protein uL13 Chain: AH

Molecule details ›

Chain: AH
Length: 145 amino acids
Theoretical weight: 16.36 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8TUE6 (Residues: 1-145; Coverage: 100%)

Gene names: CD116_01960, ERS140147_00605, NCTC13712_02165, rplM
Sequence domains: Ribosomal protein L13

Large ribosomal subunit protein uL14 Chain: AI

Molecule details ›

Chain: AI
Length: 122 amino acids
Theoretical weight: 13.16 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UUA0 (Residues: 1-122; Coverage: 100%)

Gene names: CD116_01850, ERS140147_00628, NCTC13712_02188, rplN
Sequence domains: Ribosomal protein L14p/L23e

Large ribosomal subunit protein uL15 Chain: AJ

Molecule details ›

Chain: AJ
Length: 146 amino acids
Theoretical weight: 15.63 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UGA7 (Residues: 1-146; Coverage: 100%)

Gene names: CD116_01895, ERS140147_00619, NCTC13712_02179, rplO
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Large ribosomal subunit protein uL16 Chain: AK

Molecule details ›

Chain: AK
Length: 144 amino acids
Theoretical weight: 16.27 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077V4G0 (Residues: 1-144; Coverage: 100%)

Gene names: CD116_01835, ERS140147_00631, NCTC13712_02191, rplP
Sequence domains: Ribosomal protein L16p/L10e

Large ribosomal subunit protein bL17 Chain: AL

Molecule details ›

Chain: AL
Length: 122 amino acids
Theoretical weight: 13.77 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UG91 (Residues: 1-122; Coverage: 100%)

Gene names: CD116_01935, ERS140147_00611, NCTC13712_02171, rplQ
Sequence domains: Ribosomal protein L17

Large ribosomal subunit protein uL18 Chain: AM

Molecule details ›

Chain: AM
Length: 119 amino acids
Theoretical weight: 13.12 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8TRE0 (Residues: 1-119; Coverage: 100%)

Gene names: A6760_13400, BN1321_380066, CV021_17995, E1948_03095, E1948_11800, EP54_02155, EQ90_01210, FAF17_03785, G6W63_05940, G6Y24_08820, GO793_01695, GO814_07330, GO941_09030, GO942_01070, GQX37_14855, GZ156_01250, H2639_07590, HMPREF3211_01559, M1K003_0777, NCTC13131_01577, NCTC5664_01678, NCTC6133_03024, NCTC7972_02476, QU38_04940, SAMEA1531725_01466, SAMEA1531744_00346, SAMEA2078260_00053, SAMEA2078588_00360, SAMEA2080344_00567, SAMEA2081063_01560, SAMEA4008575_01047, SAMEA70146418_00499, SAMEA70153168_01220, SAMEA70245418_00551, rplR, rplR_1
Sequence domains: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Large ribosomal subunit protein bL19 Chain: AN

Molecule details ›

Chain: AN
Length: 116 amino acids
Theoretical weight: 13.39 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UVB6 (Residues: 1-116; Coverage: 100%)

Gene names: CD116_13000, ERS140147_00145, NCTC13712_01186, rplS
Sequence domains: Ribosomal protein L19

Large ribosomal subunit protein bL20 Chain: AO

Molecule details ›

Chain: AO
Length: 118 amino acids
Theoretical weight: 13.72 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077VMP6 (Residues: 1-118; Coverage: 100%)

Gene names: CD116_08935, ERS140147_00901, NCTC13712_01667, rplT
Sequence domains: Ribosomal protein L20

Large ribosomal subunit protein bL21 Chain: AP

Molecule details ›

Chain: AP
Length: 102 amino acids
Theoretical weight: 11.35 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: D7URR3 (Residues: 1-102; Coverage: 100%)

Gene names: A6760_00855, BN1321_260285, CV021_08845, E1948_03740, E1948_08440, EP54_09325, EQ90_02350, G6W63_07760, G6Y24_01405, GO793_02930, GO793_12510, GO814_13145, GO941_09800, GO942_04920, GZ156_05380, H2639_01150, HMPREF3211_01799, M1K003_1398, NCTC10702_02586, NCTC5664_03625, NCTC6133_02189, NCTC7878_03166, NCTC7972_00279, QU38_08695, SAMEA1531725_00294, SAMEA1531744_00125, SAMEA70153168_00214, SAMEA70245418_00778, rplU
Sequence domains: Ribosomal prokaryotic L21 protein

Large ribosomal subunit protein uL22 Chain: AQ

Molecule details ›

Chain: AQ
Length: 117 amino acids
Theoretical weight: 12.86 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UKF9 (Residues: 1-117; Coverage: 100%)

Gene names: CD116_01825, ERS140147_00633, NCTC13712_02193, rplV
Sequence domains: Ribosomal protein L22p/L17e

Large ribosomal subunit protein uL23 Chain: AR

Molecule details ›

Chain: AR
Length: 91 amino acids
Theoretical weight: 10.63 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8TUB4 (Residues: 1-91; Coverage: 100%)

Gene names: A6760_13470, BN1321_380080, CV021_17925, E1948_03025, E1948_11870, EP54_02085, EQ90_01280, FAF17_03855, G6W63_05870, G6Y24_08890, GO793_01625, GO814_07400, GO941_08960, GO942_01140, GQX37_14785, GZ156_01180, H2639_07660, HMPREF3211_01573, M1K003_0791, NCTC10702_03546, NCTC13131_01591, NCTC6133_03038, NCTC7878_01010, NCTC7972_02462, QU38_05010, SAMEA1531725_01452, SAMEA1531744_00360, SAMEA2078260_00067, SAMEA2078588_00374, SAMEA2080344_00553, SAMEA2081063_01546, SAMEA4008575_01033, SAMEA70146418_00485, SAMEA70153168_01234, SAMEA70245418_00537, rplW, rplW_1
Sequence domains: Ribosomal protein L23

Large ribosomal subunit protein uL24 Chain: AS

Molecule details ›

Chain: AS
Length: 105 amino acids
Theoretical weight: 11.56 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8TRD5 (Residues: 1-105; Coverage: 100%)

Gene names: A6760_13425, BN1321_380071, CV021_17970, E1948_03070, E1948_11825, EP54_02130, EQ90_01235, FAF17_03810, G6W63_05915, G6Y24_08845, GO793_01670, GO814_07355, GO941_09005, GO942_01095, GQX37_14830, GZ156_01225, H2639_07615, HMPREF3211_01564, M1K003_0782, NCTC10702_03537, NCTC13131_01582, NCTC5664_01673, NCTC6133_03029, NCTC7878_01020, NCTC7972_02471, QU38_04965, SAMEA1531725_01461, SAMEA1531744_00351, SAMEA2078260_00058, SAMEA2078588_00365, SAMEA2080344_00562, SAMEA2081063_01555, SAMEA4008575_01042, SAMEA70146418_00494, SAMEA70153168_01225, SAMEA70245418_00546, rplX, rplX_1
Sequence domains:

Large ribosomal subunit protein bL25 Chain: AT

Molecule details ›

Chain: AT
Length: 217 amino acids
Theoretical weight: 23.81 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A133Q8Z9 (Residues: 3-219; Coverage: 99%)

Gene names: HMPREF3211_00359, ctc, rplY
Sequence domains:

50S ribosomal protein L27 Chain: AU

Molecule details ›

Chain: AU
Length: 94 amino acids
Theoretical weight: 10.33 KDa
Source organism: Staphylococcus aureus

Large ribosomal subunit protein bL28 Chain: AV

Molecule details ›

Chain: AV
Length: 62 amino acids
Theoretical weight: 7 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077URJ8 (Residues: 1-62; Coverage: 100%)

Gene names: CD116_12910, ERS140147_00162, NCTC13712_01169, rpmB
Sequence domains: Ribosomal L28 family

Large ribosomal subunit protein uL29 Chain: AW

Molecule details ›

Chain: AW
Length: 73 amino acids
Theoretical weight: 8.59 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A0H3KED7 (Residues: 1-73; Coverage: 100%)

Gene names: NWMN_2144, rpmC
Sequence domains: Ribosomal L29 protein

Large ribosomal subunit protein uL30 Chain: AX

Molecule details ›

Chain: AX
Length: 59 amino acids
Theoretical weight: 6.57 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8UVN7 (Residues: 1-59; Coverage: 100%)

Gene names: A6760_13390, BN1321_380064, CV021_18005, E1948_03105, E1948_11790, EP54_02165, EQ90_01200, FAF17_03775, G6W63_05950, G6Y24_08810, GO793_01705, GO814_07320, GO941_09040, GO942_01060, GQX37_14865, GZ156_01260, H2639_07580, HMPREF3211_01557, M1K003_0775, NCTC10702_03528, NCTC13131_01575, NCTC5664_01681, NCTC6133_03022, NCTC7878_01028, NCTC7972_02478, QU38_04930, SAMEA1531725_01468, SAMEA1531744_00344, SAMEA2078260_00051, SAMEA2078588_00358, SAMEA2080344_00569, SAMEA2081063_01562, SAMEA4008575_01049, SAMEA70146418_00501, SAMEA70153168_01218, SAMEA70245418_00553, rpmD, rpmD_1
Sequence domains: Ribosomal protein L30p/L7e

Large ribosomal subunit protein bL31B Chain: AY

Molecule details ›

Chain: AY
Length: 84 amino acids
Theoretical weight: 9.74 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: W8TRP5 (Residues: 1-84; Coverage: 100%)

Gene names: A6760_11710, BN1321_340058, CV021_10215, E1948_08755, E1948_11185, EP54_10830, EQ90_06725, FAF17_14380, G6W63_05555, G6Y24_04910, GO793_09380, GO814_01040, GO941_04115, GO942_06270, GQX37_08605, GZ156_04960, H2639_10930, HMPREF3211_02589, M1K003_2237, NCTC13131_01455, NCTC5664_01841, NCTC6133_02881, NCTC7878_02878, NCTC7972_02600, QU38_06265, SAMEA1531725_01916, SAMEA1531744_01984, SAMEA2078260_01914, SAMEA2078588_01885, SAMEA2080344_01801, SAMEA2081063_01816, SAMEA4008575_00655, SAMEA70146418_02216, SAMEA70153168_02351, SAMEA70245418_02349, rpmE2, rpmE2_1, rpmEB
Sequence domains: Ribosomal protein L31

Large ribosomal subunit protein bL32 Chain: AZ

Molecule details ›

Chain: AZ
Length: 57 amino acids
Theoretical weight: 6.5 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UWR7 (Residues: 1-57; Coverage: 100%)

Gene names: CD116_02980, ERS140147_01255, NCTC13712_01072, rpmF
Sequence domains: Ribosomal L32p protein family

Large ribosomal subunit protein bL33 Chain: A1

Molecule details ›

Chain: A1
Length: 49 amino acids
Theoretical weight: 5.94 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077V2P0 (Residues: 1-49; Coverage: 100%)

Gene names: CD116_07290, ERS140147_01724, NCTC13712_01328, rpmG, rpmG2, rpmG2_1
Sequence domains: Ribosomal protein L33

Large ribosomal subunit protein bL34 Chain: A2

Molecule details ›

Chain: A2
Length: 45 amino acids
Theoretical weight: 5.45 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: Q2YZB6 (Residues: 1-45; Coverage: 100%)

Gene names: SAB2590c, rpmH
Sequence domains: Ribosomal protein L34

Large ribosomal subunit protein bL35 Chain: A3

Molecule details ›

Chain: A3
Length: 66 amino acids
Theoretical weight: 7.72 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UL47 (Residues: 1-66; Coverage: 100%)

Gene names: CD116_08940, ERS140147_00900, NCTC13712_01668, rpmI
Sequence domains: Ribosomal protein L35

Large ribosomal subunit protein bL36 Chain: A4

Molecule details ›

Chain: A4
Length: 37 amino acids
Theoretical weight: 4.32 KDa
Source organism: Staphylococcus aureus
UniProt:

Canonical: A0A077UGV8 (Residues: 1-37; Coverage: 100%)

Gene names: CD116_01915, ERS140147_00615, NCTC13712_02175, rpmJ
Sequence domains: Ribosomal protein L36

16S ribosomal RNA Chain: Aa

Molecule details ›

Chain: Aa
Length: 1555 nucleotides
Theoretical weight: 502.98 KDa
Sequence domains: Bacterial small subunit ribosomal RNA

23S ribosomal RNA Chain: AA

Molecule details ›

Chain: AA
Length: 2923 nucleotides
Theoretical weight: 946.7 KDa
Sequence domains: Bacterial large subunit ribosomal RNA

5S ribosomal RNA Chain: AB

Molecule details ›

Chain: AB
Length: 115 nucleotides
Theoretical weight: 36.97 KDa
Sequence domains: 5S ribosomal RNA

Ligands and Environments

1 bound ligand:

No modified residues

Experiments and Validation Details

Resolution: 2.9Å

Relevant EMDB volumes: EMD-3640

Protein Data Bank in Europe

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Function and Biology Details

Structure analysis Details

Ligands and Environments

Experiments and Validation Details

Quick links

Citations

11 review citations

5 mentions without citation

PDBe › 5ngm

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Function and Biology Details

Structure analysis Details

Ligands and Environments

Experiments and Validation Details

Quick links

Citations

11 review citations

5 mentions without citation