5nuh

X-ray diffraction
2.78Å resolution

Crystal structure of SIVmac239 Nef bound to an engineered Hck SH3 domain

Released:

Function and Biology Details

Reaction catalysed:
ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-140250 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Protein Nef Chains: A, B
Molecule details ›
Chains: A, B
Length: 172 amino acids
Theoretical weight: 20.22 KDa
Source organism: Simian immunodeficiency virus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5QGG3 (Residues: 68-235; Coverage: 64%)
Gene name: nef
Sequence domains: Negative factor, (F-Protein) or Nef
Structure domains: Nef Regulatory Factor
Tyrosine-protein kinase HCK Chains: C, D
Molecule details ›
Chains: C, D
Length: 60 amino acids
Theoretical weight: 6.99 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P08631 (Residues: 79-90, 96-138; Coverage: 11%)
Gene name: HCK
Sequence domains: SH3 domain
Structure domains: SH3 Domains

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P32
Unit cell:
a: 104Å b: 104Å c: 53Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.194 0.192 0.229
Expression system: Escherichia coli