› 5t8w

X-ray diffraction
1.6Å resolution

Cytochrome c - calixarene free

Released:
DOI: 10.2210/pdb5t8w/pdb
PDB entry 5t8w coloured by chain, front view.
PDB entry 5t8w coloured by chain, side view.
PDB entry 5t8w coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Protein Recognition by Functionalized Sulfonatocalix[4]arenes.
Doolan AM, Rennie ML, Crowley PB
Chemistry 24 984-991 (2018)
PMID: 29125201

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132233 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c isoform 1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 108 amino acids
Theoretical weight: 12.04 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P00044 (Residues: 2-109; Coverage: 99%)
Gene names: CYC1, J1653, YJR048W
Sequence domains: Cytochrome c

Ligands and Environments

2 bound ligands:
Ligand HEC 2 x HEC
Ligand CL 2 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 2
Spacegroup: P212121
Unit cell:
a: 35.854Å b: 55.436Å c: 96.564Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.171 0.169 0.209
Expression system: Escherichia coli

Quick links

Citations

3 review citations

Atomic Details of Carbon-Based Nanomolecules Interacting with Proteins.
Di Costanzo et al. (2020)
2 more

1 mention without citation

Site Identification by Ligand Competitive Saturation-Biologics Approach for Structure-Based Protein Charge Prediction.
Orr et al. (2023)