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(C) 2012 Jmol Development
Jmol Version: 14.3.6_2014.08.17b 2014-08-17 17:24
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s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescript.z.js
script 1 started
FileManager.getAtomSetCollectionFromFile(https://www.ebi.ac.uk/pdbe/entry-files/download/5ta5.cif)
FileManager opening 1 https://www.ebi.ac.uk/pdbe/entry-files/download/5ta5.cif
The Resolver thinks MMCif
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/adapter/readers/cif/MMCifReader.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/adapter/readers/cif/CifReader.js
-- required by J.adapter.readers.cif.MMCifReader
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/CifDataParser.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corebio.z.js
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-- required by J.renderbio.BioShapeRenderer
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/Mesh.js
TITLE: Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.
Setting space group name to HM:P 1
found biomolecule 1: A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,FB
found biomolecule 2: B,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,GB
found biomolecule 3: A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,FB
found biomolecule 3: B,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,GB
assembly operator 1 x,y,z
assembly operator 2 x,y,z+1
unknown CIF bond order: sing
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unknown CIF bond order: doub
unknown CIF bond order: sing
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unknown CIF bond order: doub
unknown CIF bond order: sing
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unknown CIF bond order: doub
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unknown CIF bond order: doub
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unknown CIF bond order: doub
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unknown CIF bond order: doub
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unknown CIF bond order: sing
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s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coresym.z.js
Time for openFile(*5ta5): 6655 ms
reading 11778 atoms
ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: ABC
Default Van der Waals type for model set to Jmol
11778 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
TITLE: Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.
found biomolecule 1: A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,FB
found biomolecule 2: B,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,GB
found biomolecule 3: A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,FB
found biomolecule 3: B,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,GB
Script completed
Jmol script terminated