› 5tbv

X-ray diffraction
1.95Å resolution

Crystal Structure of Isoform 2 of Purine Nucleoside Phosphorylase complexed with tubercidin

Released:
DOI: 10.2210/pdb5tbv/pdb
PDB entry 5tbv coloured by chain, front view.
PDB entry 5tbv coloured by chain, side view.
PDB entry 5tbv coloured by chain, top view.
Source organism: Schistosoma mansoni
Entry authors: Faheem M, Torini JR, Romanello L, Brandao-Neto J, Pereira HM

Function and Biology Details

Reaction catalysed: 
Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-102740 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Purine nucleoside phosphorylase Chain: A
Molecule details ›
Chain: A
Length: 287 amino acids
Theoretical weight: 31.36 KDa
Source organism: Schistosoma mansoni
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A0U3AGT1 (Residues: 1-287; Coverage: 100%)
Sequence domains: Phosphorylase superfamily
Structure domains: Nucleoside phosphorylase domain

Ligands and Environments

3 bound ligands:
Ligand TBN 1 x TBN
Ligand SO4 1 x SO4
Ligand DMS 1 x DMS
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04-1
Spacegroup: P213
Unit cell:
a: 91.981Å b: 91.981Å c: 91.981Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.18 0.179 0.202
Expression system: Escherichia coli

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