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S-ADENOSYLMETHIONINE

SAM model coordinates provided in the wwPDB chemical component dictionary
S-ADENOSYLMETHIONINE in PDB entry 5ttf, assembly 1, side view.
S-ADENOSYLMETHIONINE in PDB entry 5ttf, assembly 1, top view.
Formula: C15 H22 N6 O5 S
Molecular weight: 398 Da

Environment details NEW

SAM 1505 bound to chain C
Ligands and residuesInteractions
 hydrophobic
negatively charged
aromatic
polar
cystein
water
positively charged
other
glycine
bound molecule
glycans (SNFG)
aromatic
clashes
covalent
electrostatic
metal hydrophobic
vdw
MET1048TRP1050SER1084TYR1085ARG1109PHE1110ASN1112HIS1113TYR1154PHE1158PHE1166CYS1168GLN1169HOH1606HOH1617HOH1714

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The above 2D and 3D (Mol*) views of ligand interactions use quaternary structure derived from the PDB entry.
Please note:
  • Some chain IDs in the tooltip are followed by a number in square brackets. This number corresponds to the operation ID (mmCIF ‘oper_expression’) used to transform the chain.
  • The structure seen in Mol* (3D view) was protonated using ChimeraX.
  • Interactions were calculated using Arpeggio (see details for interaction types).
  • The colour scheme used is consistent with Clustal X.

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