› 5v0k

X-ray diffraction
1.6Å resolution

RNA duplex with 2-MeImpG analogue bound-3 binding sites

Released:
DOI: 10.2210/pdb5v0k/pdb
PDB entry 5v0k coloured by chain, front view.
PDB entry 5v0k coloured by chain, side view.
PDB entry 5v0k coloured by chain, top view.
Source organism: synthetic construct
Entry authors: Zhang W, Tam CP, Szostak JW

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196992 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-3') Chain: A
Molecule details ›
Chain: A
Length: 13 nucleotides
Theoretical weight: 4.17 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand 8OS 2 x 8OS
Ligand MG 1 x MG
1 modified residue:
Ligand LCG 1 x LCG

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.1
Spacegroup: P321
Unit cell:
a: 42.229Å b: 42.229Å c: 40.098Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.177 0.174 0.226
Expression system: Not provided

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