5xad

X-ray diffraction
1.88Å resolution

NLIR - LC3B fusion protein

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-178656 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Microtubule-associated proteins 1A/1B light chain 3B Chains: A, B
Molecule details ›
Chains: A, B
Length: 119 amino acids
Theoretical weight: 14.02 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q9GZQ8 (Residues: 2-120; Coverage: 95%)
Gene names: MAP1ALC3, MAP1LC3B
Sequence domains: Autophagy protein Atg8 ubiquitin like
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Cysteine protease RavZ Chains: C, D
Molecule details ›
Chains: C, D
Length: 25 amino acids
Theoretical weight: 2.81 KDa
Source organism: Legionella pneumophila subsp. pneumophila
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q5ZUV9 (Residues: 12-34; Coverage: 5%)
Gene names: lpg1683, ravZ

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NE3A
Spacegroup: P43212
Unit cell:
a: 65.735Å b: 65.735Å c: 127.042Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.213 0.209 0.252
Expression systems:
  • Escherichia coli BL21
  • Escherichia coli BL21(DE3)