› 5xhw

X-ray diffraction
2Å resolution

Crystal structure of HddC from Yersinia pseudotuberculosis

Released:
DOI: 10.2210/pdb5xhw/pdb
PDB entry 5xhw coloured by chain, front view.
PDB entry 5xhw coloured by chain, side view.
PDB entry 5xhw coloured by chain, top view.
Source organism: Yersinia pseudotuberculosis
Primary publication:
Crystal structure of d-glycero-α-d-manno-heptose-1-phosphate guanylyltransferase from Yersinia pseudotuberculosis.
Kim H, Park J, Kim S, Shin DH
Biochim Biophys Acta Proteins Proteom 1866 482-487 (2018)
PMID: 29277661

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-184528 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleotidyl transferase domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 237 amino acids
Theoretical weight: 26.78 KDa
Source organism: Yersinia pseudotuberculosis
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8GJ90 (Residues: 1-225; Coverage: 100%)
Gene name: hddC
Sequence domains: Nucleotidyl transferase

Ligands and Environments

1 bound ligand:
Ligand SO4 4 x SO4
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 7A (6B, 6C1)
Spacegroup: P43
Unit cell:
a: 81.07Å b: 81.07Å c: 52.96Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.228 0.227 0.242
Expression system: Escherichia coli

Quick links

Citations

1 citations in other articles

Structural basis of metallo-β-lactamase resistance to taniborbactam.
Drusin et al. (2024)

1 mention without citation

GTP Preference of d-Glycero-α-d-manno-Heptose-1-Phosphate Guanylyltransferase from Yersinia pseudotuberculosis.
Kim et al. (2019)