› 5xnd

Solution NMR

Solution structure of the major fish allergen parvalbumin Sco j 1 derived from the Pacific mackerel

Released:
DOI: 10.2210/pdb5xnd/pdb
PDB entry 5xnd coloured by chain, ensemble of 20 models, front view.
PDB entry 5xnd coloured by chain, ensemble of 20 models, side view.
PDB entry 5xnd coloured by chain, ensemble of 20 models, top view.
Source organism: Scomber japonicus
Primary publication:
Solution structure of the major fish allergen parvalbumin Sco j 1 derived from the Pacific mackerel.
Kumeta H, Nakayama H, Ogura K
OpenAccess logo Sci Rep 7 17160 (2017)
PMID: 29215073

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-157848 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Parvalbumin beta Chain: A
Molecule details ›
Chain: A
Length: 114 amino acids
Theoretical weight: 11.97 KDa
Source organism: Scomber japonicus
Expression system: Escherichia coli
UniProt:
  • Canonical: P59747 (Residues: 1-109; Coverage: 100%)
Sequence domains: EF-hand domain pair
Structure domains: EF-hand

Ligands and Environments

1 bound ligand:
Ligand CA 2 x CA
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this NMR entry.
Chemical shift assignment: 94%
Refinement method: simulated annealing
Expression system: Escherichia coli

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Citations

1 review citation

Fish Allergenicity Modulation Using Tailored Enriched Diets-Where Are We?
Schrama et al. (2022)
2 other articles

2 mentions without citation

Structural Changes beyond the EF-Hand Contribute to Apparent Calcium Binding Affinities: Insights from Parvalbumins.
Immadisetty et al. (2021)
1 more