› 5xsl

X-ray diffraction
3.3Å resolution

Crystal structure of the PWWP domain of human hepatoma-derived growth factor

Released:
DOI: 10.2210/pdb5xsl/pdb
PDB entry 5xsl coloured by chain, front view.
PDB entry 5xsl coloured by chain, side view.
PDB entry 5xsl coloured by chain, top view.
Source organism: Rattus norvegicus
Entry authors: Chen LY, Huang YC, Hsieh YC, Lin PJ, Chen CJ

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-186584 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Hepatoma-derived growth factor Chain: A
Molecule details ›
Chain: A
Length: 120 amino acids
Theoretical weight: 13.74 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q8VHK7 (Residues: 1-100; Coverage: 42%)
Gene name: Hdgf
Sequence domains: PWWP domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: P6422
Unit cell:
a: 79.49Å b: 79.49Å c: 105.099Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.229 0.225 0.282
Expression system: Escherichia coli BL21

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