› 5ygc

X-ray diffraction
2Å resolution

Crystal structure of Drosophila melanogaster Papi extended Tudor domain

Released:
DOI: 10.2210/pdb5ygc/pdb
Model geometry
Fit model/data
PDB entry 5ygc coloured by chain, front view.
PDB entry 5ygc coloured by chain, side view.
PDB entry 5ygc coloured by chain, top view.
Source organism: Drosophila melanogaster
Primary publication:
Structural insights into the sequence-specific recognition of Piwi by Drosophila Papi.
Zhang Y, Liu W, Li R, Gu J, Wu P, Peng C, Ma J, Wu L, Yu Y, Huang Y
Proc Natl Acad Sci U S A 115 3374-3379 (2018)
PMID: 29531043

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-194291 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Tudor and KH domain-containing protein homolog Chain: A
Molecule details ›
Chain: A
Length: 223 amino acids
Theoretical weight: 25.16 KDa
Source organism: Drosophila melanogaster
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9VQ91 (Residues: 259-479; Coverage: 38%)
Gene names: CG7082, Tdrd2, papi
Sequence domains: Tudor domain
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P6522
Unit cell:
a: 77.808Å b: 77.808Å c: 144.014Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.183 0.18 0.213
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

7 review citations

Structure and function of eTudor domain containing TDRD proteins.
Gan et al. (2019)
6 more

1 mention without citation

Structural insights into the sequence-specific recognition of Piwi by Drosophila Papi.
Zhang et al. (2018)