› 5yln

X-ray diffraction
2.19Å resolution

Zinc dependent alcohol dehydrogenase 2 from Streptococcus pneumonia - apo form

Released:
DOI: 10.2210/pdb5yln/pdb
PDB entry 5yln coloured by chain, front view.
PDB entry 5yln coloured by chain, side view.
PDB entry 5yln coloured by chain, top view.
Source organism: Streptococcus pneumoniae D39
Entry authors: Donghyuk S, Seungsu H, Sangho L

Function and Biology Details

Reaction catalysed: 
A primary alcohol + NAD(+) = an aldehyde + NADH
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-493804 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Enoyl reductase (ER) domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 356 amino acids
Theoretical weight: 38.48 KDa
Source organism: Streptococcus pneumoniae D39
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A0H2ZRI0 (Residues: 1-352; Coverage: 100%)
Gene name: SPD_1865
Sequence domains:
Structure domains: Medium-chain alcohol dehydrogenases, catalytic domain

Ligands and Environments

2 bound ligands:
Ligand ZN 8 x ZN
Ligand TRS 4 x TRS
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 5C (4A)
Spacegroup: P212121
Unit cell:
a: 88.177Å b: 123.245Å c: 130.356Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.206 0.205 0.254
Expression system: Escherichia coli

Quick links