› 5yz4

X-ray diffraction
2.14Å resolution

Structure of the PIN domain endonuclease Utp24

Released:
DOI: 10.2210/pdb5yz4/pdb
PDB entry 5yz4 coloured by chain, front view.
PDB entry 5yz4 coloured by chain, side view.
PDB entry 5yz4 coloured by chain, top view.
Source organism: Schizosaccharomyces pombe 972h-
Primary publication:
Structural and functional analysis of Utp24, an endonuclease for processing 18S ribosomal RNA.
An W, Du Y, Ye K
OpenAccess logo PLoS One 13 e0195723 (2018)
PMID: 29641590

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-517934 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
rRNA-processing protein fcf1 Chain: A
Molecule details ›
Chain: A
Length: 133 amino acids
Theoretical weight: 15.37 KDa
Source organism: Schizosaccharomyces pombe 972h-
Expression system: Escherichia coli
UniProt:
  • Canonical: O13610 (Residues: 60-192; Coverage: 69%)
Gene names: SPBC32H8.04c, fcf1
Sequence domains: Fcf1

Ligands and Environments

2 bound ligands:
Ligand CA 1 x CA
Ligand ZN 1 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U1
Spacegroup: C2221
Unit cell:
a: 48.74Å b: 73.328Å c: 74.262Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.228 0.222 0.287
Expression system: Escherichia coli

Quick links

Citations

5 citation in other articles

Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae.
Black et al. (2020)
4 more

1 mention without citation

Structural and functional analysis of Utp24, an endonuclease for processing 18S ribosomal RNA.
An et al. (2018)