› 5zh6

X-ray diffraction
1.54Å resolution

Crystal structure of Parvalbumin SPV-II of Mustelus griseus

Released:
DOI: 10.2210/pdb5zh6/pdb
PDB entry 5zh6 coloured by chain, front view.
PDB entry 5zh6 coloured by chain, side view.
PDB entry 5zh6 coloured by chain, top view.
Source organism: Mustelus griseus
Primary publication:
Purification, Characterization, and Crystal Structure of Parvalbumins, the Major Allergens in Mustelus griseus.
Yang RQ, Chen YL, Chen F, Wang H, Zhang Q, Liu GM, Jin T, Cao MJ
J Agric Food Chem 66 8150-8159 (2018)
PMID: 29969026

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-497409 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Parvalbumin Chains: A, B
Molecule details ›
Chains: A, B
Length: 107 amino acids
Theoretical weight: 11.52 KDa
Source organism: Mustelus griseus
UniProt:
  • Canonical: A0A3F2YLV2 (Residues: 1-107; Coverage: 100%)
Sequence domains: EF-hand domain pair
Structure domains: EF-hand

Ligands and Environments

2 bound ligands:
Ligand CA 4 x CA
Ligand SO4 4 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P21
Unit cell:
a: 44.87Å b: 41.8Å c: 60.34Å
α: 90° β: 110.41° γ: 90°
R-values:
R R work R free
0.195 0.194 0.212

Quick links

Citations

1 mention without citation

Comprehensive Sequence Analysis of Parvalbumins in Fish and Their Comparison with Parvalbumins in Tetrapod Species.
Dijkstra et al. (2022)