6apd

X-ray diffraction
4.1Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero pentadecamer (preferred)
PDBe Complex ID:
PDB-CPX-100917 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (5 distinct):
Fibritin; Fusion glycoprotein F0 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 573 amino acids
Theoretical weight: 63.78 KDa
Source organisms: Expression system: Homo sapiens
UniProt:
  • Canonical: P03420 (Residues: 1-513; Coverage: 89%)
  • Canonical: P10104 (Residues: 458-484; Coverage: 6%)
Gene names: F, wac
Sequence domains: Fusion glycoprotein F0
Ig-like domain-containing protein Chains: D, F, H
Molecule details ›
Chains: D, F, H
Length: 228 amino acids
Theoretical weight: 24.12 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q6GMX6 (Residues: 20-77, 78-122, 123-239; Coverage: 49%)
Gene name: IGH@
Sequence domains:
Ig-like domain-containing protein Chains: E, G, I
Molecule details ›
Chains: E, G, I
Length: 215 amino acids
Theoretical weight: 23.3 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q8TCD0 (Residues: 21-239; Coverage: 98%)
Sequence domains:
Immunoglobulin gamma-1 heavy chain; Immunoglobulin heavy variable 3-21 Chains: J, K, N
Molecule details ›
Chains: J, K, N
Length: 226 amino acids
Theoretical weight: 23.88 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: A0A0B4J1V1 (Residues: 20-117; Coverage: 100%)
  • Canonical: P0DOX5 (Residues: 109-223; Coverage: 26%)
Gene name: IGHV3-21
Sequence domains:
Ig-like domain-containing protein Chains: L, M, O
Molecule details ›
Chains: L, M, O
Length: 218 amino acids
Theoretical weight: 22.96 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q6GMX4 (Residues: 20-118, 119-236; Coverage: 100%)
Gene name: IGL@
Sequence domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P41212
Unit cell:
a: 229.47Å b: 229.47Å c: 304.05Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.206 0.204 0.256
Expression system: Homo sapiens